miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9773 3' -53.7 NC_002577.1 + 162935 0.67 0.953332
Target:  5'- ---cGGCGgcgGCaGgGGGuuucGGUCGCCCu -3'
miRNA:   3'- cuuaCCGCaa-CG-CgCUUu---CCAGCGGG- -5'
9773 3' -53.7 NC_002577.1 + 162584 0.66 0.967583
Target:  5'- --uUGGCGgaGCgcaggGCGAAAGGaccccgcuuUCGCCg -3'
miRNA:   3'- cuuACCGCaaCG-----CGCUUUCC---------AGCGGg -5'
9773 3' -53.7 NC_002577.1 + 161517 0.73 0.692553
Target:  5'- -uGUGGCcggGCGCcAGAGGcCGCCCg -3'
miRNA:   3'- cuUACCGcaaCGCGcUUUCCaGCGGG- -5'
9773 3' -53.7 NC_002577.1 + 161310 0.69 0.89462
Target:  5'- ---aGGCGUUGCagGUGuuccAGGaCGCCCg -3'
miRNA:   3'- cuuaCCGCAACG--CGCuu--UCCaGCGGG- -5'
9773 3' -53.7 NC_002577.1 + 160689 0.66 0.973409
Target:  5'- ---gGGaacCGUccauaaUGCGCGcgGGGUCGCgCCa -3'
miRNA:   3'- cuuaCC---GCA------ACGCGCuuUCCAGCG-GG- -5'
9773 3' -53.7 NC_002577.1 + 159532 0.66 0.970599
Target:  5'- ---cGGCGaUGUGCGGuag--CGCCCa -3'
miRNA:   3'- cuuaCCGCaACGCGCUuuccaGCGGG- -5'
9773 3' -53.7 NC_002577.1 + 157294 1.13 0.00281
Target:  5'- cGAAUGGCGUUGCGCGAAAGGUCGCCCg -3'
miRNA:   3'- -CUUACCGCAACGCGCUUUCCAGCGGG- -5'
9773 3' -53.7 NC_002577.1 + 156684 0.72 0.752397
Target:  5'- uGAAUGGUGUUGaGCGAAcGGUC-CCg -3'
miRNA:   3'- -CUUACCGCAACgCGCUUuCCAGcGGg -5'
9773 3' -53.7 NC_002577.1 + 156616 0.67 0.944828
Target:  5'- ---cGGgGggGgGUGggGGGggcaCGCCCg -3'
miRNA:   3'- cuuaCCgCaaCgCGCuuUCCa---GCGGG- -5'
9773 3' -53.7 NC_002577.1 + 155639 0.66 0.964354
Target:  5'- uGGUGGUGUUGgGCGggGGGcaagaaGCg- -3'
miRNA:   3'- cUUACCGCAACgCGCuuUCCag----CGgg -5'
9773 3' -53.7 NC_002577.1 + 153714 0.66 0.967583
Target:  5'- uGggUGGCGaagGUGCu-GAGGa-GCCCg -3'
miRNA:   3'- -CuuACCGCaa-CGCGcuUUCCagCGGG- -5'
9773 3' -53.7 NC_002577.1 + 141699 0.66 0.964354
Target:  5'- uGGUGGUGUUGgGCGggGGGcaagaaGCg- -3'
miRNA:   3'- cUUACCGCAACgCGCuuUCCag----CGgg -5'
9773 3' -53.7 NC_002577.1 + 140721 0.67 0.944828
Target:  5'- ---cGGgGggGgGUGggGGGggcaCGCCCg -3'
miRNA:   3'- cuuaCCgCaaCgCGCuuUCCa---GCGGG- -5'
9773 3' -53.7 NC_002577.1 + 140654 0.72 0.722833
Target:  5'- cGAAUGGUGUUGaGCGAAcGGUC-CCg -3'
miRNA:   3'- -CUUACCGCAACgCGCUUuCCAGcGGg -5'
9773 3' -53.7 NC_002577.1 + 140044 1.13 0.00281
Target:  5'- cGAAUGGCGUUGCGCGAAAGGUCGCCCg -3'
miRNA:   3'- -CUUACCGCAACGCGCUUUCCAGCGGG- -5'
9773 3' -53.7 NC_002577.1 + 137805 0.66 0.970599
Target:  5'- ---cGGCGaUGUGCGGuag--CGCCCa -3'
miRNA:   3'- cuuaCCGCaACGCGCUuuccaGCGGG- -5'
9773 3' -53.7 NC_002577.1 + 136649 0.66 0.973409
Target:  5'- ---gGGaacCGUccauaaUGCGCGcgGGGUCGCgCCa -3'
miRNA:   3'- cuuaCC---GCA------ACGCGCuuUCCAGCG-GG- -5'
9773 3' -53.7 NC_002577.1 + 136027 0.69 0.89462
Target:  5'- ---aGGCGUUGCagGUGuuccAGGaCGCCCg -3'
miRNA:   3'- cuuaCCGCAACG--CGCuu--UCCaGCGGG- -5'
9773 3' -53.7 NC_002577.1 + 135821 0.73 0.692553
Target:  5'- -uGUGGCcggGCGCcAGAGGcCGCCCg -3'
miRNA:   3'- cuUACCGcaaCGCGcUUUCCaGCGGG- -5'
9773 3' -53.7 NC_002577.1 + 134743 0.66 0.967583
Target:  5'- --uUGGCGgaGCgcaggGCGAAAGGaccccgcuuUCGCCg -3'
miRNA:   3'- cuuACCGCaaCG-----CGCUUUCC---------AGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.