miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9776 5' -55.6 NC_002577.1 + 138956 1.09 0.003297
Target:  5'- cGCGGCGCUACGCCGAUUCAGACACCUc -3'
miRNA:   3'- -CGCCGCGAUGCGGCUAAGUCUGUGGA- -5'
9776 5' -55.6 NC_002577.1 + 158382 1.09 0.003297
Target:  5'- cGCGGCGCUACGCCGAUUCAGACACCUc -3'
miRNA:   3'- -CGCCGCGAUGCGGCUAAGUCUGUGGA- -5'
9776 5' -55.6 NC_002577.1 + 127907 0.76 0.416461
Target:  5'- aGUGGCGCguaGCCGuugUCAGAUGCCa -3'
miRNA:   3'- -CGCCGCGaugCGGCua-AGUCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 5706 0.76 0.416461
Target:  5'- aGUGGCGCguaGCCGuugUCAGAUGCCa -3'
miRNA:   3'- -CGCCGCGaugCGGCua-AGUCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 140780 0.72 0.638778
Target:  5'- aGCGGCGUgcagGCGCCGGUgggcuuacaGGGCGCg- -3'
miRNA:   3'- -CGCCGCGa---UGCGGCUAag-------UCUGUGga -5'
9776 5' -55.6 NC_002577.1 + 156557 0.72 0.638778
Target:  5'- aGCGGCGUgcagGCGCCGGUgggcuuacaGGGCGCg- -3'
miRNA:   3'- -CGCCGCGa---UGCGGCUAag-------UCUGUGga -5'
9776 5' -55.6 NC_002577.1 + 132481 0.72 0.659124
Target:  5'- uGCGGCGCUGuaguCGCCGGaugcagUCAGgACACg- -3'
miRNA:   3'- -CGCCGCGAU----GCGGCUa-----AGUC-UGUGga -5'
9776 5' -55.6 NC_002577.1 + 1133 0.72 0.659124
Target:  5'- uGCGGCGCUGuaguCGCCGGaugcagUCAGgACACg- -3'
miRNA:   3'- -CGCCGCGAU----GCGGCUa-----AGUC-UGUGga -5'
9776 5' -55.6 NC_002577.1 + 137412 0.7 0.73896
Target:  5'- cGCGGC-CUACGCgaaCGGUUCggcuccucggGGGCGCCa -3'
miRNA:   3'- -CGCCGcGAUGCG---GCUAAG----------UCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 159925 0.7 0.73896
Target:  5'- cGCGGC-CUACGCgaaCGGUUCggcuccucggGGGCGCCg -3'
miRNA:   3'- -CGCCGcGAUGCG---GCUAAG----------UCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 157975 0.7 0.748619
Target:  5'- gGCGGCGCgcACGCCGGaaagcacggCAGACcacgaGCCg -3'
miRNA:   3'- -CGCCGCGa-UGCGGCUaa-------GUCUG-----UGGa -5'
9776 5' -55.6 NC_002577.1 + 139363 0.7 0.748619
Target:  5'- gGCGGCGCgcACGCCGGaaagcacggCAGACcacgaGCCg -3'
miRNA:   3'- -CGCCGCGa-UGCGGCUaa-------GUCUG-----UGGa -5'
9776 5' -55.6 NC_002577.1 + 158873 0.7 0.767625
Target:  5'- aCGGCGCggccGCgGCCGg--CGGGCGCCa -3'
miRNA:   3'- cGCCGCGa---UG-CGGCuaaGUCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 138464 0.7 0.767625
Target:  5'- aCGGCGCggccGCgGCCGg--CGGGCGCCa -3'
miRNA:   3'- cGCCGCGa---UG-CGGCuaaGUCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 36238 0.69 0.786153
Target:  5'- -aGGCGUugcuUGCGCCGAcUCuGACACg- -3'
miRNA:   3'- cgCCGCG----AUGCGGCUaAGuCUGUGga -5'
9776 5' -55.6 NC_002577.1 + 121586 0.69 0.812895
Target:  5'- cCGcGCGCUcggcGCGCCGGagCAGGCGCg- -3'
miRNA:   3'- cGC-CGCGA----UGCGGCUaaGUCUGUGga -5'
9776 5' -55.6 NC_002577.1 + 137703 0.69 0.829925
Target:  5'- uCGGCGCUG-GCUG---CAGACGCCa -3'
miRNA:   3'- cGCCGCGAUgCGGCuaaGUCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 11611 0.69 0.829925
Target:  5'- uGCGGCGggggaaaagGCGCCGAUccgaCGGACGCg- -3'
miRNA:   3'- -CGCCGCga-------UGCGGCUAa---GUCUGUGga -5'
9776 5' -55.6 NC_002577.1 + 122003 0.69 0.829925
Target:  5'- uGCGGCGggggaaaagGCGCCGAUccgaCGGACGCg- -3'
miRNA:   3'- -CGCCGCga-------UGCGGCUAa---GUCUGUGga -5'
9776 5' -55.6 NC_002577.1 + 159635 0.69 0.829925
Target:  5'- uCGGCGCUG-GCUG---CAGACGCCa -3'
miRNA:   3'- cGCCGCGAUgCGGCuaaGUCUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.