miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9776 5' -55.6 NC_002577.1 + 1133 0.72 0.659124
Target:  5'- uGCGGCGCUGuaguCGCCGGaugcagUCAGgACACg- -3'
miRNA:   3'- -CGCCGCGAU----GCGGCUa-----AGUC-UGUGga -5'
9776 5' -55.6 NC_002577.1 + 3276 0.66 0.936637
Target:  5'- aCGGCGCUGggcucCGuCCGAUgcucucgaucUCAGGCAgCa -3'
miRNA:   3'- cGCCGCGAU-----GC-GGCUA----------AGUCUGUgGa -5'
9776 5' -55.6 NC_002577.1 + 4599 0.67 0.890381
Target:  5'- cGCGGCGCgcgacgacgccGCGCCGucccguccgacGUUUGGaACGCCg -3'
miRNA:   3'- -CGCCGCGa----------UGCGGC-----------UAAGUC-UGUGGa -5'
9776 5' -55.6 NC_002577.1 + 4787 0.66 0.931679
Target:  5'- aCGGCGCgGCGUCG--UCGcGCGCCg -3'
miRNA:   3'- cGCCGCGaUGCGGCuaAGUcUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 4866 0.68 0.86179
Target:  5'- aCGGCGCgcGCGCCGAUgcUCGGccgguucuuCGCCc -3'
miRNA:   3'- cGCCGCGa-UGCGGCUA--AGUCu--------GUGGa -5'
9776 5' -55.6 NC_002577.1 + 5044 0.66 0.933192
Target:  5'- uCGGCGCgcGCGCCGuguccccccucggcgGUgugcacgggaguaUCGGGCGCCg -3'
miRNA:   3'- cGCCGCGa-UGCGGC---------------UA-------------AGUCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 5706 0.76 0.416461
Target:  5'- aGUGGCGCguaGCCGuugUCAGAUGCCa -3'
miRNA:   3'- -CGCCGCGaugCGGCua-AGUCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 8132 0.66 0.915386
Target:  5'- aGCGGCGCgaaACGCCcgcgcucucuaaGcgUCcgaaggccguacGGACACCg -3'
miRNA:   3'- -CGCCGCGa--UGCGG------------CuaAG------------UCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 8315 0.67 0.902719
Target:  5'- cGCgGGCGUUucGCGCCGcugcggcGUUUAGGCGCg- -3'
miRNA:   3'- -CG-CCGCGA--UGCGGC-------UAAGUCUGUGga -5'
9776 5' -55.6 NC_002577.1 + 10578 0.67 0.903346
Target:  5'- aGCGGCGUUcgGCCGcgUCGccGACGCg- -3'
miRNA:   3'- -CGCCGCGAugCGGCuaAGU--CUGUGga -5'
9776 5' -55.6 NC_002577.1 + 10864 0.68 0.85099
Target:  5'- cGCGGCGUccggaaccgucggACGUCGAgggaGGACGCCc -3'
miRNA:   3'- -CGCCGCGa------------UGCGGCUaag-UCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 11611 0.69 0.829925
Target:  5'- uGCGGCGggggaaaagGCGCCGAUccgaCGGACGCg- -3'
miRNA:   3'- -CGCCGCga-------UGCGGCUAa---GUCUGUGga -5'
9776 5' -55.6 NC_002577.1 + 12109 0.66 0.921053
Target:  5'- --cGCGCUcggcGCGCCGGagCAGGCGCg- -3'
miRNA:   3'- cgcCGCGA----UGCGGCUaaGUCUGUGga -5'
9776 5' -55.6 NC_002577.1 + 16707 0.68 0.86179
Target:  5'- gGCGGCuucuacgcGUUACGCgCGGUUCAGuagucGCGCUg -3'
miRNA:   3'- -CGCCG--------CGAUGCG-GCUAAGUC-----UGUGGa -5'
9776 5' -55.6 NC_002577.1 + 36238 0.69 0.786153
Target:  5'- -aGGCGUugcuUGCGCCGAcUCuGACACg- -3'
miRNA:   3'- cgCCGCG----AUGCGGCUaAGuCUGUGga -5'
9776 5' -55.6 NC_002577.1 + 43671 0.68 0.846242
Target:  5'- uGCGuGCGg-GCGCuuCGAgaCAGACACCUg -3'
miRNA:   3'- -CGC-CGCgaUGCG--GCUaaGUCUGUGGA- -5'
9776 5' -55.6 NC_002577.1 + 63245 0.67 0.88356
Target:  5'- uGCGuGCGCUGUG-CGAguuuaCAGACACCg -3'
miRNA:   3'- -CGC-CGCGAUGCgGCUaa---GUCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 81218 0.67 0.896977
Target:  5'- aCGGCGUUcugcaGCGCCGuaaCAGcCGCCg -3'
miRNA:   3'- cGCCGCGA-----UGCGGCuaaGUCuGUGGa -5'
9776 5' -55.6 NC_002577.1 + 81411 0.67 0.903346
Target:  5'- gGCGGCuGUUACGgCGcugCAGaACGCCg -3'
miRNA:   3'- -CGCCG-CGAUGCgGCuaaGUC-UGUGGa -5'
9776 5' -55.6 NC_002577.1 + 85255 0.67 0.896977
Target:  5'- gGCGGgGCUAuCGUCGGUUacuacgggCAGACGgCCc -3'
miRNA:   3'- -CGCCgCGAU-GCGGCUAA--------GUCUGU-GGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.