miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9776 5' -55.6 NC_002577.1 + 158382 1.09 0.003297
Target:  5'- cGCGGCGCUACGCCGAUUCAGACACCUc -3'
miRNA:   3'- -CGCCGCGAUGCGGCUAAGUCUGUGGA- -5'
9776 5' -55.6 NC_002577.1 + 81218 0.67 0.896977
Target:  5'- aCGGCGUUcugcaGCGCCGuaaCAGcCGCCg -3'
miRNA:   3'- cGCCGCGA-----UGCGGCuaaGUCuGUGGa -5'
9776 5' -55.6 NC_002577.1 + 10578 0.67 0.903346
Target:  5'- aGCGGCGUUcgGCCGcgUCGccGACGCg- -3'
miRNA:   3'- -CGCCGCGAugCGGCuaAGU--CUGUGga -5'
9776 5' -55.6 NC_002577.1 + 138777 0.66 0.936637
Target:  5'- uCGGCGUaGCGCCGcggCGGugACg- -3'
miRNA:   3'- cGCCGCGaUGCGGCuaaGUCugUGga -5'
9776 5' -55.6 NC_002577.1 + 159925 0.7 0.73896
Target:  5'- cGCGGC-CUACGCgaaCGGUUCggcuccucggGGGCGCCg -3'
miRNA:   3'- -CGCCGcGAUGCG---GCUAAG----------UCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 139363 0.7 0.748619
Target:  5'- gGCGGCGCgcACGCCGGaaagcacggCAGACcacgaGCCg -3'
miRNA:   3'- -CGCCGCGa-UGCGGCUaa-------GUCUG-----UGGa -5'
9776 5' -55.6 NC_002577.1 + 36238 0.69 0.786153
Target:  5'- -aGGCGUugcuUGCGCCGAcUCuGACACg- -3'
miRNA:   3'- cgCCGCG----AUGCGGCUaAGuCUGUGga -5'
9776 5' -55.6 NC_002577.1 + 121586 0.69 0.812895
Target:  5'- cCGcGCGCUcggcGCGCCGGagCAGGCGCg- -3'
miRNA:   3'- cGC-CGCGA----UGCGGCUaaGUCUGUGga -5'
9776 5' -55.6 NC_002577.1 + 43671 0.68 0.846242
Target:  5'- uGCGuGCGg-GCGCuuCGAgaCAGACACCUg -3'
miRNA:   3'- -CGC-CGCgaUGCG--GCUaaGUCUGUGGA- -5'
9776 5' -55.6 NC_002577.1 + 85255 0.67 0.896977
Target:  5'- gGCGGgGCUAuCGUCGGUUacuacgggCAGACGgCCc -3'
miRNA:   3'- -CGCCgCGAU-GCGGCUAA--------GUCUGU-GGa -5'
9776 5' -55.6 NC_002577.1 + 4866 0.68 0.86179
Target:  5'- aCGGCGCgcGCGCCGAUgcUCGGccgguucuuCGCCc -3'
miRNA:   3'- cGCCGCGa-UGCGGCUA--AGUCu--------GUGGa -5'
9776 5' -55.6 NC_002577.1 + 11611 0.69 0.829925
Target:  5'- uGCGGCGggggaaaagGCGCCGAUccgaCGGACGCg- -3'
miRNA:   3'- -CGCCGCga-------UGCGGCUAa---GUCUGUGga -5'
9776 5' -55.6 NC_002577.1 + 127907 0.76 0.416461
Target:  5'- aGUGGCGCguaGCCGuugUCAGAUGCCa -3'
miRNA:   3'- -CGCCGCGaugCGGCua-AGUCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 110537 0.68 0.86179
Target:  5'- cGCGGUuuggGCgGCGCCGAUUuaaaauugCGGACGCg- -3'
miRNA:   3'- -CGCCG----CGaUGCGGCUAA--------GUCUGUGga -5'
9776 5' -55.6 NC_002577.1 + 140780 0.72 0.638778
Target:  5'- aGCGGCGUgcagGCGCCGGUgggcuuacaGGGCGCg- -3'
miRNA:   3'- -CGCCGCGa---UGCGGCUAag-------UCUGUGga -5'
9776 5' -55.6 NC_002577.1 + 137703 0.69 0.829925
Target:  5'- uCGGCGCUG-GCUG---CAGACGCCa -3'
miRNA:   3'- cGCCGCGAUgCGGCuaaGUCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 4599 0.67 0.890381
Target:  5'- cGCGGCGCgcgacgacgccGCGCCGucccguccgacGUUUGGaACGCCg -3'
miRNA:   3'- -CGCCGCGa----------UGCGGC-----------UAAGUC-UGUGGa -5'
9776 5' -55.6 NC_002577.1 + 125299 0.67 0.902719
Target:  5'- cGCgGGCGUUucGCGCCGcugcggcGUUUAGGCGCg- -3'
miRNA:   3'- -CG-CCGCGA--UGCGGC-------UAAGUCUGUGga -5'
9776 5' -55.6 NC_002577.1 + 132481 0.72 0.659124
Target:  5'- uGCGGCGCUGuaguCGCCGGaugcagUCAGgACACg- -3'
miRNA:   3'- -CGCCGCGAU----GCGGCUa-----AGUC-UGUGga -5'
9776 5' -55.6 NC_002577.1 + 158873 0.7 0.767625
Target:  5'- aCGGCGCggccGCgGCCGg--CGGGCGCCa -3'
miRNA:   3'- cGCCGCGa---UG-CGGCuaaGUCUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.