miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9777 5' -55.2 NC_002577.1 + 4253 0.66 0.9214
Target:  5'- -aGGGGGGuggGGGGGAUaUGCGaCCGc -3'
miRNA:   3'- caCCUCCUuuaCCCCUUG-ACGC-GGUu -5'
9777 5' -55.2 NC_002577.1 + 154963 0.66 0.9214
Target:  5'- cGUGGGGGAg--GGGGGGCcgGC-CCu- -3'
miRNA:   3'- -CACCUCCUuuaCCCCUUGa-CGcGGuu -5'
9777 5' -55.2 NC_002577.1 + 142374 0.66 0.9214
Target:  5'- cGUGGGGGAg--GGGGGGCcgGC-CCu- -3'
miRNA:   3'- -CACCUCCUuuaCCCCUUGa-CGcGGuu -5'
9777 5' -55.2 NC_002577.1 + 129361 0.66 0.9214
Target:  5'- -aGGGGGGuggGGGGGAUaUGCGaCCGc -3'
miRNA:   3'- caCCUCCUuuaCCCCUUG-ACGC-GGUu -5'
9777 5' -55.2 NC_002577.1 + 16519 0.66 0.919684
Target:  5'- aUGGGGGAguucgaagaugaggGcgGGGGggUUG-GCCGGg -3'
miRNA:   3'- cACCUCCU--------------UuaCCCCuuGACgCGGUU- -5'
9777 5' -55.2 NC_002577.1 + 1541 0.67 0.88992
Target:  5'- aUGGGGGggGggGGGGGAgaGgGUCGc -3'
miRNA:   3'- cACCUCCuuUa-CCCCUUgaCgCGGUu -5'
9777 5' -55.2 NC_002577.1 + 132073 0.67 0.88992
Target:  5'- aUGGGGGggGggGGGGGAgaGgGUCGc -3'
miRNA:   3'- cACCUCCuuUa-CCCCUUgaCgCGGUu -5'
9777 5' -55.2 NC_002577.1 + 134357 0.67 0.88992
Target:  5'- -cGGGGGGGggGGGGGGggGCGCg-- -3'
miRNA:   3'- caCCUCCUUuaCCCCUUgaCGCGguu -5'
9777 5' -55.2 NC_002577.1 + 154857 0.67 0.882902
Target:  5'- -gGGGGGGGggGGGGGGggGCGCgGGu -3'
miRNA:   3'- caCCUCCUUuaCCCCUUgaCGCGgUU- -5'
9777 5' -55.2 NC_002577.1 + 162973 0.67 0.882902
Target:  5'- -gGGGGGGGggGGGGGGC-GCGacuCCAAg -3'
miRNA:   3'- caCCUCCUUuaCCCCUUGaCGC---GGUU- -5'
9777 5' -55.2 NC_002577.1 + 125121 0.67 0.882902
Target:  5'- -cGGGGGGGggGGGGGGgUGUGUgAGu -3'
miRNA:   3'- caCCUCCUUuaCCCCUUgACGCGgUU- -5'
9777 5' -55.2 NC_002577.1 + 8493 0.67 0.882902
Target:  5'- -cGGGGGGGggGGGGGGgUGUGUgAGu -3'
miRNA:   3'- caCCUCCUUuaCCCCUUgACGCGgUU- -5'
9777 5' -55.2 NC_002577.1 + 87219 0.67 0.878579
Target:  5'- -aGGcGGgcAUGGGGGGCUGUacaacacaguucgucGCCGAg -3'
miRNA:   3'- caCCuCCuuUACCCCUUGACG---------------CGGUU- -5'
9777 5' -55.2 NC_002577.1 + 142483 0.67 0.875651
Target:  5'- -cGGGGGggGgggGGGGGGggGCGCgGGu -3'
miRNA:   3'- caCCUCCuuUa--CCCCUUgaCGCGgUU- -5'
9777 5' -55.2 NC_002577.1 + 160601 0.67 0.868173
Target:  5'- -aGG-GGggGUGGGGGGCcuUGUGCa-- -3'
miRNA:   3'- caCCuCCuuUACCCCUUG--ACGCGguu -5'
9777 5' -55.2 NC_002577.1 + 136736 0.67 0.868173
Target:  5'- -aGG-GGggGUGGGGGGCcuUGUGCa-- -3'
miRNA:   3'- caCCuCCuuUACCCCUUG--ACGCGguu -5'
9777 5' -55.2 NC_002577.1 + 156615 0.67 0.868173
Target:  5'- -gGGGGGggGUGGGGGggGCa-CGCCc- -3'
miRNA:   3'- caCCUCCuuUACCCCU--UGacGCGGuu -5'
9777 5' -55.2 NC_002577.1 + 140722 0.67 0.868173
Target:  5'- -gGGGGGggGUGGGGGggGCa-CGCCc- -3'
miRNA:   3'- caCCUCCuuUACCCCU--UGacGCGGuu -5'
9777 5' -55.2 NC_002577.1 + 160751 0.67 0.860474
Target:  5'- -cGGAGuuccAAUGGGGGGCUuccuaaaggcgGCGCCAc -3'
miRNA:   3'- caCCUCcu--UUACCCCUUGA-----------CGCGGUu -5'
9777 5' -55.2 NC_002577.1 + 136587 0.67 0.860474
Target:  5'- -cGGAGuuccAAUGGGGGGCUuccuaaaggcgGCGCCAc -3'
miRNA:   3'- caCCUCcu--UUACCCCUUGA-----------CGCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.