miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9778 3' -54 NC_002577.1 + 11708 0.66 0.973059
Target:  5'- gGGAGGGuAGCCGgCCGgcCUGCaguUCGGGa -3'
miRNA:   3'- aCCUUCU-UCGGCaGGC--GAUGc--AGUCC- -5'
9778 3' -54 NC_002577.1 + 121905 0.66 0.973059
Target:  5'- gGGAGGGuAGCCGgCCGgcCUGCaGUuCGGGa -3'
miRNA:   3'- aCCUUCU-UCGGCaGGC--GAUG-CA-GUCC- -5'
9778 3' -54 NC_002577.1 + 83348 0.66 0.970248
Target:  5'- gGGAAGggGaCGagUCGCUACGagaCGGGc -3'
miRNA:   3'- aCCUUCuuCgGCa-GGCGAUGCa--GUCC- -5'
9778 3' -54 NC_002577.1 + 16671 0.66 0.960568
Target:  5'- aGGAAccguAGCCGUuuGUa--GUCAGGg -3'
miRNA:   3'- aCCUUcu--UCGGCAggCGaugCAGUCC- -5'
9778 3' -54 NC_002577.1 + 42727 0.67 0.956906
Target:  5'- aGGAAccAGGCCGagCCGCU--GUCAGGu -3'
miRNA:   3'- aCCUUc-UUCGGCa-GGCGAugCAGUCC- -5'
9778 3' -54 NC_002577.1 + 136984 0.67 0.95302
Target:  5'- cGGAAGAGGCCGcgUCgGCguccGCGagaAGGc -3'
miRNA:   3'- aCCUUCUUCGGC--AGgCGa---UGCag-UCC- -5'
9778 3' -54 NC_002577.1 + 160353 0.67 0.95302
Target:  5'- cGGAAGAGGCCGcgUCgGCguccGCGagaAGGc -3'
miRNA:   3'- aCCUUCUUCGGC--AGgCGa---UGCag-UCC- -5'
9778 3' -54 NC_002577.1 + 161817 0.67 0.948905
Target:  5'- cUGGAAGGggacGGCgGUCCGCcggagaccacCGUcCAGGa -3'
miRNA:   3'- -ACCUUCU----UCGgCAGGCGau--------GCA-GUCC- -5'
9778 3' -54 NC_002577.1 + 135520 0.67 0.948905
Target:  5'- cUGGAAGGggacGGCgGUCCGCcggagaccacCGUcCAGGa -3'
miRNA:   3'- -ACCUUCU----UCGgCAGGCGau--------GCA-GUCC- -5'
9778 3' -54 NC_002577.1 + 161105 0.67 0.935153
Target:  5'- gGGggGcGAGCCGggcgCCGgUACGcaaaaCAGGu -3'
miRNA:   3'- aCCuuC-UUCGGCa---GGCgAUGCa----GUCC- -5'
9778 3' -54 NC_002577.1 + 136233 0.67 0.935153
Target:  5'- gGGggGcGAGCCGggcgCCGgUACGcaaaaCAGGu -3'
miRNA:   3'- aCCuuC-UUCGGCa---GGCgAUGCa----GUCC- -5'
9778 3' -54 NC_002577.1 + 103717 0.68 0.913479
Target:  5'- aUGGuaccGGggGCgCG-CCGCUAggggagacuuuCGUCGGGg -3'
miRNA:   3'- -ACCu---UCuuCG-GCaGGCGAU-----------GCAGUCC- -5'
9778 3' -54 NC_002577.1 + 156184 0.68 0.907465
Target:  5'- cGGGAcGGGCUG-CCGaccggGCGUCGGGg -3'
miRNA:   3'- aCCUUcUUCGGCaGGCga---UGCAGUCC- -5'
9778 3' -54 NC_002577.1 + 141154 0.68 0.907465
Target:  5'- cGGGAcGGGCUG-CCGaccggGCGUCGGGg -3'
miRNA:   3'- aCCUUcUUCGGCaGGCga---UGCAGUCC- -5'
9778 3' -54 NC_002577.1 + 124455 0.69 0.894731
Target:  5'- cGGggGAGuCCGUCgCGUaa-GUCGGGg -3'
miRNA:   3'- aCCuuCUUcGGCAG-GCGaugCAGUCC- -5'
9778 3' -54 NC_002577.1 + 9159 0.69 0.894731
Target:  5'- cGGggGAGuCCGUCgCGUaa-GUCGGGg -3'
miRNA:   3'- aCCuuCUUcGGCAG-GCGaugCAGUCC- -5'
9778 3' -54 NC_002577.1 + 158083 0.69 0.873918
Target:  5'- uUGGAggcauAGAAGCCG-CCGCgGCGcCGGc -3'
miRNA:   3'- -ACCU-----UCUUCGGCaGGCGaUGCaGUCc -5'
9778 3' -54 NC_002577.1 + 139255 0.69 0.873918
Target:  5'- uUGGAggcauAGAAGCCG-CCGCgGCGcCGGc -3'
miRNA:   3'- -ACCU-----UCUUCGGCaGGCGaUGCaGUCc -5'
9778 3' -54 NC_002577.1 + 124691 0.7 0.826609
Target:  5'- gGGGAGGAGCCGUuaGCUcacCGgccccgCGGGa -3'
miRNA:   3'- aCCUUCUUCGGCAggCGAu--GCa-----GUCC- -5'
9778 3' -54 NC_002577.1 + 8923 0.7 0.826609
Target:  5'- gGGGAGGAGCCGUuaGCUcacCGgccccgCGGGa -3'
miRNA:   3'- aCCUUCUUCGGCAggCGAu--GCa-----GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.