Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9778 | 5' | -59.3 | NC_002577.1 | + | 162655 | 0.66 | 0.812648 |
Target: 5'- gCUC-CUCCGgAuCCGGUGCggccCCGUCCg -3' miRNA: 3'- -GAGcGGGGCgUcGGUUACGa---GGCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 116572 | 0.66 | 0.812648 |
Target: 5'- aCUCGCCUgGCGGgcuCCAGUGCUUa-UCa -3' miRNA: 3'- -GAGCGGGgCGUC---GGUUACGAGgcAGg -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 134673 | 0.66 | 0.812648 |
Target: 5'- gCUC-CUCCGgAuCCGGUGCggccCCGUCCg -3' miRNA: 3'- -GAGcGGGGCgUcGGUUACGa---GGCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 161378 | 0.66 | 0.803225 |
Target: 5'- uUCGCcgcgaaaacCCCGCGGCCGgcgacaucagucuGUGCUgcggaagcaaCGUCCg -3' miRNA: 3'- gAGCG---------GGGCGUCGGU-------------UACGAg---------GCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 135960 | 0.66 | 0.803225 |
Target: 5'- uUCGCcgcgaaaacCCCGCGGCCGgcgacaucagucuGUGCUgcggaagcaaCGUCCg -3' miRNA: 3'- gAGCG---------GGGCGUCGGU-------------UACGAg---------GCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 152896 | 0.66 | 0.801492 |
Target: 5'- gCUCGCgguguaagaCCCggaGCGGCCAucgagaaagaaucaGguagGCUCCGUCUa -3' miRNA: 3'- -GAGCG---------GGG---CGUCGGU--------------Ua---CGAGGCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 138461 | 0.66 | 0.795383 |
Target: 5'- -gCGCggCCGCGGCCGGcggGCgccaucaCCGUCCu -3' miRNA: 3'- gaGCGg-GGCGUCGGUUa--CGa------GGCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 158876 | 0.66 | 0.795383 |
Target: 5'- -gCGCggCCGCGGCCGGcggGCgccaucaCCGUCCu -3' miRNA: 3'- gaGCGg-GGCGUCGGUUa--CGa------GGCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 4866 | 0.66 | 0.795383 |
Target: 5'- -aCGgCgCGCGcGCCGAUGCUCgG-CCg -3' miRNA: 3'- gaGCgGgGCGU-CGGUUACGAGgCaGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 128748 | 0.66 | 0.795383 |
Target: 5'- -aCGgCgCGCGcGCCGAUGCUCgG-CCg -3' miRNA: 3'- gaGCgGgGCGU-CGGUUACGAGgCaGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 161251 | 0.66 | 0.786538 |
Target: 5'- -aCGCCggCCGCGGUCAGcGCcgaaaCGUCCg -3' miRNA: 3'- gaGCGG--GGCGUCGGUUaCGag---GCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 136087 | 0.66 | 0.786538 |
Target: 5'- -aCGCCggCCGCGGUCAGcGCcgaaaCGUCCg -3' miRNA: 3'- gaGCGG--GGCGUCGGUUaCGag---GCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 136596 | 0.66 | 0.781167 |
Target: 5'- aCUC-CCUCGCAcGUCAGcagaagcccagacacUGCUgCGUCCg -3' miRNA: 3'- -GAGcGGGGCGU-CGGUU---------------ACGAgGCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 160741 | 0.66 | 0.781167 |
Target: 5'- aCUC-CCUCGCAcGUCAGcagaagcccagacacUGCUgCGUCCg -3' miRNA: 3'- -GAGcGGGGCGU-CGGUU---------------ACGAgGCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 159883 | 0.66 | 0.777562 |
Target: 5'- gCUCGUUCaGCGGCCGGguagacGCgaaaCCGUCCc -3' miRNA: 3'- -GAGCGGGgCGUCGGUUa-----CGa---GGCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 137455 | 0.66 | 0.777562 |
Target: 5'- gCUCGUUCaGCGGCCGGguagacGCgaaaCCGUCCc -3' miRNA: 3'- -GAGCGGGgCGUCGGUUa-----CGa---GGCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 158233 | 0.66 | 0.777562 |
Target: 5'- uCUCGUCCCGCAcgcGCCuacggauucauGGUGCagcagcucgCCGUCg -3' miRNA: 3'- -GAGCGGGGCGU---CGG-----------UUACGa--------GGCAGg -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 139105 | 0.66 | 0.777562 |
Target: 5'- uCUCGUCCCGCAcgcGCCuacggauucauGGUGCagcagcucgCCGUCg -3' miRNA: 3'- -GAGCGGGGCGU---CGG-----------UUACGa--------GGCAGg -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 67150 | 0.66 | 0.768462 |
Target: 5'- aUCGCaucCUCGCAGUCAuUGCUCUuggCCg -3' miRNA: 3'- gAGCG---GGGCGUCGGUuACGAGGca-GG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 117256 | 0.67 | 0.759249 |
Target: 5'- aUCGCUCCGuUAGCaauUGaCgugCCGUCCg -3' miRNA: 3'- gAGCGGGGC-GUCGguuAC-Ga--GGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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