miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9778 5' -59.3 NC_002577.1 + 163258 0.69 0.622915
Target:  5'- -gCGCCCgCGCGGCCGGcggGCa-UGUCCg -3'
miRNA:   3'- gaGCGGG-GCGUCGGUUa--CGagGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 162655 0.66 0.812648
Target:  5'- gCUC-CUCCGgAuCCGGUGCggccCCGUCCg -3'
miRNA:   3'- -GAGcGGGGCgUcGGUUACGa---GGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 161378 0.66 0.803225
Target:  5'- uUCGCcgcgaaaacCCCGCGGCCGgcgacaucagucuGUGCUgcggaagcaaCGUCCg -3'
miRNA:   3'- gAGCG---------GGGCGUCGGU-------------UACGAg---------GCAGG- -5'
9778 5' -59.3 NC_002577.1 + 161261 1.11 0.001072
Target:  5'- uCUCGCCCCGCAGCCAAUGCUCCGUCCg -3'
miRNA:   3'- -GAGCGGGGCGUCGGUUACGAGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 161251 0.66 0.786538
Target:  5'- -aCGCCggCCGCGGUCAGcGCcgaaaCGUCCg -3'
miRNA:   3'- gaGCGG--GGCGUCGGUUaCGag---GCAGG- -5'
9778 5' -59.3 NC_002577.1 + 161068 0.71 0.505931
Target:  5'- -gCGCUgaCCGCGGCCGgcgucAUGUUCCuGUCCc -3'
miRNA:   3'- gaGCGG--GGCGUCGGU-----UACGAGG-CAGG- -5'
9778 5' -59.3 NC_002577.1 + 160741 0.66 0.781167
Target:  5'- aCUC-CCUCGCAcGUCAGcagaagcccagacacUGCUgCGUCCg -3'
miRNA:   3'- -GAGcGGGGCGU-CGGUU---------------ACGAgGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 159883 0.66 0.777562
Target:  5'- gCUCGUUCaGCGGCCGGguagacGCgaaaCCGUCCc -3'
miRNA:   3'- -GAGCGGGgCGUCGGUUa-----CGa---GGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 159065 0.72 0.442065
Target:  5'- aUgGCgCCCGcCGGCCGcgGCcgcgCCGUCCu -3'
miRNA:   3'- gAgCG-GGGC-GUCGGUuaCGa---GGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 158876 0.66 0.795383
Target:  5'- -gCGCggCCGCGGCCGGcggGCgccaucaCCGUCCu -3'
miRNA:   3'- gaGCGg-GGCGUCGGUUa--CGa------GGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 158233 0.66 0.777562
Target:  5'- uCUCGUCCCGCAcgcGCCuacggauucauGGUGCagcagcucgCCGUCg -3'
miRNA:   3'- -GAGCGGGGCGU---CGG-----------UUACGa--------GGCAGg -5'
9778 5' -59.3 NC_002577.1 + 155796 0.72 0.468903
Target:  5'- -cCGCCCCuacacacaccaCAGCCAcgGCUCCGgcagugCCg -3'
miRNA:   3'- gaGCGGGGc----------GUCGGUuaCGAGGCa-----GG- -5'
9778 5' -59.3 NC_002577.1 + 155778 0.68 0.682424
Target:  5'- -aCGCCCCuGUAaggagcggaucGCCAGUGCUgCCGgcgucgCCa -3'
miRNA:   3'- gaGCGGGG-CGU-----------CGGUUACGA-GGCa-----GG- -5'
9778 5' -59.3 NC_002577.1 + 154808 0.67 0.731004
Target:  5'- aUUGCCCCGUcGCCucu-CUuuGUCCc -3'
miRNA:   3'- gAGCGGGGCGuCGGuuacGAggCAGG- -5'
9778 5' -59.3 NC_002577.1 + 152896 0.66 0.801492
Target:  5'- gCUCGCgguguaagaCCCggaGCGGCCAucgagaaagaaucaGguagGCUCCGUCUa -3'
miRNA:   3'- -GAGCG---------GGG---CGUCGGU--------------Ua---CGAGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 142528 0.67 0.731004
Target:  5'- aUUGCCCCGUcGCCucu-CUuuGUCCc -3'
miRNA:   3'- gAGCGGGGCGuCGGuuacGAggCAGG- -5'
9778 5' -59.3 NC_002577.1 + 141559 0.68 0.682424
Target:  5'- -aCGCCCCuGUAaggagcggaucGCCAGUGCUgCCGgcgucgCCa -3'
miRNA:   3'- gaGCGGGG-CGU-----------CGGUUACGA-GGCa-----GG- -5'
9778 5' -59.3 NC_002577.1 + 141542 0.72 0.468903
Target:  5'- -cCGCCCCuacacacaccaCAGCCAcgGCUCCGgcagugCCg -3'
miRNA:   3'- gaGCGGGGc----------GUCGGUuaCGAGGCa-----GG- -5'
9778 5' -59.3 NC_002577.1 + 139105 0.66 0.777562
Target:  5'- uCUCGUCCCGCAcgcGCCuacggauucauGGUGCagcagcucgCCGUCg -3'
miRNA:   3'- -GAGCGGGGCGU---CGG-----------UUACGa--------GGCAGg -5'
9778 5' -59.3 NC_002577.1 + 138461 0.66 0.795383
Target:  5'- -gCGCggCCGCGGCCGGcggGCgccaucaCCGUCCu -3'
miRNA:   3'- gaGCGg-GGCGUCGGUUa--CGa------GGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.