miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9779 3' -60 NC_002577.1 + 45427 0.66 0.762802
Target:  5'- --uUCCCGUagaggcaaGGCCGGCGGguUC-GUCa -3'
miRNA:   3'- uuuGGGGCG--------CCGGCCGCUguAGuCAG- -5'
9779 3' -60 NC_002577.1 + 75129 0.66 0.762802
Target:  5'- aAAACCUCGCGaCgCGGCGucACGUuucCAGUCg -3'
miRNA:   3'- -UUUGGGGCGCcG-GCCGC--UGUA---GUCAG- -5'
9779 3' -60 NC_002577.1 + 10701 0.66 0.753464
Target:  5'- cGGCCCCGCaccCgCGGCGAgGUCGGa- -3'
miRNA:   3'- uUUGGGGCGcc-G-GCCGCUgUAGUCag -5'
9779 3' -60 NC_002577.1 + 122912 0.66 0.753464
Target:  5'- cGGCCCCGCaccCgCGGCGAgGUCGGa- -3'
miRNA:   3'- uUUGGGGCGcc-G-GCCGCUgUAGUCag -5'
9779 3' -60 NC_002577.1 + 160590 0.66 0.734489
Target:  5'- gGGGCCuuGUGcaGCUGGCGACAggcggaGGUCc -3'
miRNA:   3'- -UUUGGggCGC--CGGCCGCUGUag----UCAG- -5'
9779 3' -60 NC_002577.1 + 136747 0.66 0.734488
Target:  5'- gGGGCCuuGUGcaGCUGGCGACAggcggaGGUCc -3'
miRNA:   3'- -UUUGGggCGC--CGGCCGCUGUag----UCAG- -5'
9779 3' -60 NC_002577.1 + 77930 0.66 0.724869
Target:  5'- --uCCCCGCgGGCUGuGaCGACGUCA-UCg -3'
miRNA:   3'- uuuGGGGCG-CCGGC-C-GCUGUAGUcAG- -5'
9779 3' -60 NC_002577.1 + 158072 0.67 0.705409
Target:  5'- gAAGCCgCCGCGgcGCCGGCug---CAGUCg -3'
miRNA:   3'- -UUUGG-GGCGC--CGGCCGcuguaGUCAG- -5'
9779 3' -60 NC_002577.1 + 139266 0.67 0.705409
Target:  5'- gAAGCCgCCGCGgcGCCGGCug---CAGUCg -3'
miRNA:   3'- -UUUGG-GGCGC--CGGCCGcuguaGUCAG- -5'
9779 3' -60 NC_002577.1 + 134210 0.67 0.675797
Target:  5'- gAAACCCCcugccGCcGCCGGCaagaGUCGGUCa -3'
miRNA:   3'- -UUUGGGG-----CGcCGGCCGcug-UAGUCAG- -5'
9779 3' -60 NC_002577.1 + 163118 0.67 0.675797
Target:  5'- gAAACCCCcugccGCcGCCGGCaagaGUCGGUCa -3'
miRNA:   3'- -UUUGGGG-----CGcCGGCCGcug-UAGUCAG- -5'
9779 3' -60 NC_002577.1 + 134127 0.67 0.675797
Target:  5'- uGGCCgCGCGgagccGCCGGCGGuCggCGGUCu -3'
miRNA:   3'- uUUGGgGCGC-----CGGCCGCU-GuaGUCAG- -5'
9779 3' -60 NC_002577.1 + 163201 0.67 0.675797
Target:  5'- uGGCCgCGCGgagccGCCGGCGGuCggCGGUCu -3'
miRNA:   3'- uUUGGgGCGC-----CGGCCGCU-GuaGUCAG- -5'
9779 3' -60 NC_002577.1 + 136269 0.68 0.644876
Target:  5'- -cGCUgaCCGCGGCCGGCGuCAuguuccuguccccUCAGg- -3'
miRNA:   3'- uuUGG--GGCGCCGGCCGCuGU-------------AGUCag -5'
9779 3' -60 NC_002577.1 + 161069 0.68 0.644875
Target:  5'- -cGCUgaCCGCGGCCGGCGuCAuguuccuguccccUCAGg- -3'
miRNA:   3'- uuUGG--GGCGCCGGCCGCuGU-------------AGUCag -5'
9779 3' -60 NC_002577.1 + 53618 0.68 0.625863
Target:  5'- aGAACUCUaGCGGCCGGCGu--UCGauGUCa -3'
miRNA:   3'- -UUUGGGG-CGCCGGCCGCuguAGU--CAG- -5'
9779 3' -60 NC_002577.1 + 138302 0.68 0.625863
Target:  5'- --cCUCCGCGGCCG-CGGCcgCGGcCu -3'
miRNA:   3'- uuuGGGGCGCCGGCcGCUGuaGUCaG- -5'
9779 3' -60 NC_002577.1 + 159036 0.68 0.625863
Target:  5'- --cCUCCGCGGCCG-CGGCcgCGGcCu -3'
miRNA:   3'- uuuGGGGCGCCGGCcGCUGuaGUCaG- -5'
9779 3' -60 NC_002577.1 + 6938 0.68 0.605869
Target:  5'- --uCCCCGUuuGGCCGGUGG-AUgAGUCg -3'
miRNA:   3'- uuuGGGGCG--CCGGCCGCUgUAgUCAG- -5'
9779 3' -60 NC_002577.1 + 126676 0.68 0.605869
Target:  5'- --uCCCCGUuuGGCCGGUGG-AUgAGUCg -3'
miRNA:   3'- uuuGGGGCG--CCGGCCGCUgUAgUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.