miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9781 3' -51.9 NC_002577.1 + 108023 0.66 0.987177
Target:  5'- uGGUaaGAUcg-UGUGGGCGUGgGCGCu -3'
miRNA:   3'- gUCAg-CUGuaaACGCUCGUACgCGCG- -5'
9781 3' -51.9 NC_002577.1 + 10802 0.66 0.987177
Target:  5'- gUAGaCGACGUUcuCGGGacgGCGCGCg -3'
miRNA:   3'- -GUCaGCUGUAAacGCUCguaCGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 80829 0.66 0.987177
Target:  5'- aGGUCGGCAaUuuacguuggaUGUGGGgguccguaaCAUGCGCGUg -3'
miRNA:   3'- gUCAGCUGUaA----------ACGCUC---------GUACGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 122812 0.66 0.987177
Target:  5'- gUAGaCGACGUUcuCGGGacgGCGCGCg -3'
miRNA:   3'- -GUCaGCUGUAAacGCUCguaCGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 75661 0.66 0.983669
Target:  5'- -cGUCGcCGaUUGCGAaCAUGgGCGUg -3'
miRNA:   3'- guCAGCuGUaAACGCUcGUACgCGCG- -5'
9781 3' -51.9 NC_002577.1 + 23353 0.66 0.983669
Target:  5'- cCGGUCGuCAgaaGCGAGCGcucuaugcagGCGuCGCg -3'
miRNA:   3'- -GUCAGCuGUaaaCGCUCGUa---------CGC-GCG- -5'
9781 3' -51.9 NC_002577.1 + 100960 0.67 0.981241
Target:  5'- gCAGUCGACGgccaccgguccUGCG-GCAgugGgGCGUa -3'
miRNA:   3'- -GUCAGCUGUaa---------ACGCuCGUa--CgCGCG- -5'
9781 3' -51.9 NC_002577.1 + 82093 0.67 0.979478
Target:  5'- gCAGUUGuuACGggcgGCgGGGCcUGCGCGCc -3'
miRNA:   3'- -GUCAGC--UGUaaa-CG-CUCGuACGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 141825 0.67 0.979478
Target:  5'- --cUCGACAcgcuccUGCGAGCGacUGUGCGg -3'
miRNA:   3'- gucAGCUGUaa----ACGCUCGU--ACGCGCg -5'
9781 3' -51.9 NC_002577.1 + 93553 0.67 0.977105
Target:  5'- gAGUCG-CGUggUGCG-GC-UGCGCGg -3'
miRNA:   3'- gUCAGCuGUAa-ACGCuCGuACGCGCg -5'
9781 3' -51.9 NC_002577.1 + 84725 0.67 0.977105
Target:  5'- gCGGUCGuCAUUgGCGuuUcUGCGCGUa -3'
miRNA:   3'- -GUCAGCuGUAAaCGCucGuACGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 23716 0.67 0.971764
Target:  5'- -uGUC-ACgAUUUGCGGauGCAUGCgGCGCu -3'
miRNA:   3'- guCAGcUG-UAAACGCU--CGUACG-CGCG- -5'
9781 3' -51.9 NC_002577.1 + 140087 0.68 0.965581
Target:  5'- -cGUCGcGCcgUcGCGAGCccccGCGCGCc -3'
miRNA:   3'- guCAGC-UGuaAaCGCUCGua--CGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 1518 0.68 0.965581
Target:  5'- aCGGaaaCGGCGgaugUGCGcGCAUGCGCucGCg -3'
miRNA:   3'- -GUCa--GCUGUaa--ACGCuCGUACGCG--CG- -5'
9781 3' -51.9 NC_002577.1 + 132096 0.68 0.965581
Target:  5'- aCGGaaaCGGCGgaugUGCGcGCAUGCGCucGCg -3'
miRNA:   3'- -GUCa--GCUGUaa--ACGCuCGUACGCG--CG- -5'
9781 3' -51.9 NC_002577.1 + 157251 0.68 0.965581
Target:  5'- -cGUCGcGCcgUcGCGAGCccccGCGCGCc -3'
miRNA:   3'- guCAGC-UGuaAaCGCUCGua--CGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 97731 0.68 0.962156
Target:  5'- --cUCGGCGUccgUGCuGGGCGggagacGCGCGCg -3'
miRNA:   3'- gucAGCUGUAa--ACG-CUCGUa-----CGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 139566 0.68 0.950483
Target:  5'- gCGGcUCGugGUcUGCcgugcuuuccGGCGUGCGCGCc -3'
miRNA:   3'- -GUC-AGCugUAaACGc---------UCGUACGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 157771 0.68 0.950483
Target:  5'- gCGGcUCGugGUcUGCcgugcuuuccGGCGUGCGCGCc -3'
miRNA:   3'- -GUC-AGCugUAaACGc---------UCGUACGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 16459 0.69 0.946111
Target:  5'- -cGUCGACAUUgagcgGCG-GCGgugguguucuUGCGCGg -3'
miRNA:   3'- guCAGCUGUAAa----CGCuCGU----------ACGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.