miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9892 5' -52.1 NC_002641.1 + 120260 0.66 0.991391
Target:  5'- cGCugGCGAGcCGCCCCCcccuucgGAaaaaaacaggaugUGUGGAGGc -3'
miRNA:   3'- -UGugUGUUU-GUGGGGG-------CU-------------GCACUUCC- -5'
9892 5' -52.1 NC_002641.1 + 153216 0.66 0.989106
Target:  5'- gGCucCAUAGACGCCCCCGAuuuuacccucccCGU--AGGc -3'
miRNA:   3'- -UGu-GUGUUUGUGGGGGCU------------GCAcuUCC- -5'
9892 5' -52.1 NC_002641.1 + 142547 0.66 0.988967
Target:  5'- cACGCGagaAGACGCCCCCG-CG-GAcuauucggauucuGGGu -3'
miRNA:   3'- -UGUGUg--UUUGUGGGGGCuGCaCU-------------UCC- -5'
9892 5' -52.1 NC_002641.1 + 68406 0.66 0.988248
Target:  5'- uGCGauagaaAUGGACaACCCCCcuaccgugaauaaucGGCGUGGAGGa -3'
miRNA:   3'- -UGUg-----UGUUUG-UGGGGG---------------CUGCACUUCC- -5'
9892 5' -52.1 NC_002641.1 + 148712 0.66 0.987493
Target:  5'- aACAUGCuuuucguAGGCAUgCCCGGCGUGuagagauGGGg -3'
miRNA:   3'- -UGUGUG-------UUUGUGgGGGCUGCACu------UCC- -5'
9892 5' -52.1 NC_002641.1 + 133760 0.66 0.987493
Target:  5'- aACAUGCuuuucguAGGCAUgCCCGGCGUGuagagauGGGg -3'
miRNA:   3'- -UGUGUG-------UUUGUGgGGGCUGCACu------UCC- -5'
9892 5' -52.1 NC_002641.1 + 84299 0.66 0.986042
Target:  5'- cCGCACuacACACCaCgCCGcucuCGUGGAGGc -3'
miRNA:   3'- uGUGUGuu-UGUGG-G-GGCu---GCACUUCC- -5'
9892 5' -52.1 NC_002641.1 + 126947 0.67 0.98026
Target:  5'- gGCGCAauaGAACACCgCCGAgGU--AGGc -3'
miRNA:   3'- -UGUGUg--UUUGUGGgGGCUgCAcuUCC- -5'
9892 5' -52.1 NC_002641.1 + 155525 0.67 0.98026
Target:  5'- gGCGCAauaGAACACCgCCGAgGU--AGGc -3'
miRNA:   3'- -UGUGUg--UUUGUGGgGGCUgCAcuUCC- -5'
9892 5' -52.1 NC_002641.1 + 1302 0.67 0.977983
Target:  5'- -aGCAUAAAUAgCCCCGAUuUGAcAGGu -3'
miRNA:   3'- ugUGUGUUUGUgGGGGCUGcACU-UCC- -5'
9892 5' -52.1 NC_002641.1 + 122421 0.67 0.977983
Target:  5'- -aGCAUAAAUAgCCCCGAUuUGAcAGGu -3'
miRNA:   3'- ugUGUGUUUGUgGGGGCUGcACU-UCC- -5'
9892 5' -52.1 NC_002641.1 + 111488 0.67 0.975518
Target:  5'- cUACACGugacuAACACCCCCGAauauuagucauaUGUGAGu- -3'
miRNA:   3'- uGUGUGU-----UUGUGGGGGCU------------GCACUUcc -5'
9892 5' -52.1 NC_002641.1 + 103794 0.67 0.972857
Target:  5'- -gGCGCucuuUACCgaCCGugGUGggGGg -3'
miRNA:   3'- ugUGUGuuu-GUGGg-GGCugCACuuCC- -5'
9892 5' -52.1 NC_002641.1 + 131896 0.68 0.955995
Target:  5'- cGCACAUAAACaaagcugGCUCCCGcCGUcugaGAGGGc -3'
miRNA:   3'- -UGUGUGUUUG-------UGGGGGCuGCA----CUUCC- -5'
9892 5' -52.1 NC_002641.1 + 150576 0.68 0.955995
Target:  5'- cGCACAUAAACaaagcugGCUCCCGcCGUcugaGAGGGc -3'
miRNA:   3'- -UGUGUGUUUG-------UGGGGGCuGCA----CUUCC- -5'
9892 5' -52.1 NC_002641.1 + 128059 0.69 0.943761
Target:  5'- aAUugGCu-GCAUaugCCCCGcCGUGAGGGg -3'
miRNA:   3'- -UGugUGuuUGUG---GGGGCuGCACUUCC- -5'
9892 5' -52.1 NC_002641.1 + 154413 0.69 0.943761
Target:  5'- aAUugGCu-GCAUaugCCCCGcCGUGAGGGg -3'
miRNA:   3'- -UGugUGuuUGUG---GGGGCuGCACUUCC- -5'
9892 5' -52.1 NC_002641.1 + 10753 0.69 0.943761
Target:  5'- uGCGCGgAGAUACCgUCGGCGUacGGGa -3'
miRNA:   3'- -UGUGUgUUUGUGGgGGCUGCAcuUCC- -5'
9892 5' -52.1 NC_002641.1 + 148400 0.69 0.932617
Target:  5'- aGCGCGCAAGguaacaaaucccccCACCCCCcGCGguguuaugaUGggGGa -3'
miRNA:   3'- -UGUGUGUUU--------------GUGGGGGcUGC---------ACuuCC- -5'
9892 5' -52.1 NC_002641.1 + 134072 0.69 0.932617
Target:  5'- aGCGCGCAAGguaacaaaucccccCACCCCCcGCGguguuaugaUGggGGa -3'
miRNA:   3'- -UGUGUGUUU--------------GUGGGGGcUGC---------ACuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.