Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9894 | 3' | -52.4 | NC_002641.1 | + | 109747 | 0.66 | 0.987329 |
Target: 5'- uGGCAu--GUGCUGcGCGAGAAuCGGUa -3' miRNA: 3'- -CCGUugcCGCGACaUGCUUUU-GCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 43202 | 0.66 | 0.987329 |
Target: 5'- uGGcCAugGGCGCgcugGUagACG-AggUGGCg -3' miRNA: 3'- -CC-GUugCCGCGa---CA--UGCuUuuGCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 109223 | 0.66 | 0.987329 |
Target: 5'- aGGUGACGGgaGUgaaUGUGCGcccauacacaaAAGACGGCg -3' miRNA: 3'- -CCGUUGCCg-CG---ACAUGC-----------UUUUGCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 157257 | 0.66 | 0.985682 |
Target: 5'- cGCuAACGGCGCgcagGaGCGAAAGaagGGCc -3' miRNA: 3'- cCG-UUGCCGCGa---CaUGCUUUUg--CCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 125215 | 0.66 | 0.985682 |
Target: 5'- cGCuAACGGCGCgcagGaGCGAAAGaagGGCc -3' miRNA: 3'- cCG-UUGCCGCGa---CaUGCUUUUg--CCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 51093 | 0.66 | 0.985682 |
Target: 5'- ----gUGGCGCauuauuucUGaGCGGAGACGGCUa -3' miRNA: 3'- ccguuGCCGCG--------ACaUGCUUUUGCCGA- -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 12634 | 0.66 | 0.983876 |
Target: 5'- uGGgGAUGGaGCUGUucaacuuCGGGcGCGGCUg -3' miRNA: 3'- -CCgUUGCCgCGACAu------GCUUuUGCCGA- -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 42483 | 0.66 | 0.983876 |
Target: 5'- uGUcGCGGCGggGgAUGAAAugGGCUu -3' miRNA: 3'- cCGuUGCCGCgaCaUGCUUUugCCGA- -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 122464 | 0.66 | 0.979754 |
Target: 5'- gGGCAACGuG-GCUGUugccCGAcAGACGGUc -3' miRNA: 3'- -CCGUUGC-CgCGACAu---GCU-UUUGCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 1258 | 0.66 | 0.979754 |
Target: 5'- gGGCAACGuG-GCUGUugccCGAcAGACGGUc -3' miRNA: 3'- -CCGUUGC-CgCGACAu---GCU-UUUGCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 109374 | 0.67 | 0.974895 |
Target: 5'- --aAACGGCGCgccacugGAGAACGGCa -3' miRNA: 3'- ccgUUGCCGCGacaug--CUUUUGCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 1512 | 0.67 | 0.974632 |
Target: 5'- uGUAGCGGcCGUUGUACGGGAAgagugccCGaGCg -3' miRNA: 3'- cCGUUGCC-GCGACAUGCUUUU-------GC-CGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 122210 | 0.67 | 0.974632 |
Target: 5'- uGUAGCGGcCGUUGUACGGGAAgagugccCGaGCg -3' miRNA: 3'- cCGUUGCC-GCGACAUGCUUUU-------GC-CGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 99253 | 0.67 | 0.969238 |
Target: 5'- cGGCAucuaGGuCGC-GUGCGcgaucGAGACGGCg -3' miRNA: 3'- -CCGUug--CC-GCGaCAUGC-----UUUUGCCGa -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 23056 | 0.68 | 0.95531 |
Target: 5'- -aCAGCuuCGCUGUA-GAGAGCGGCUg -3' miRNA: 3'- ccGUUGccGCGACAUgCUUUUGCCGA- -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 125673 | 0.68 | 0.95531 |
Target: 5'- aGUGACGGCGCg--GCGAGAAaaaGcGCUa -3' miRNA: 3'- cCGUUGCCGCGacaUGCUUUUg--C-CGA- -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 156799 | 0.68 | 0.95531 |
Target: 5'- aGUGACGGCGCg--GCGAGAAaaaGcGCUa -3' miRNA: 3'- cCGUUGCCGCGacaUGCUUUUg--C-CGA- -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 125359 | 0.68 | 0.954117 |
Target: 5'- aGGCAGCguugucGGCGCUgcaaagugugGUGucugaauugaacucCGGAAGCGGCUu -3' miRNA: 3'- -CCGUUG------CCGCGA----------CAU--------------GCUUUUGCCGA- -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 157113 | 0.68 | 0.954117 |
Target: 5'- aGGCAGCguugucGGCGCUgcaaagugugGUGucugaauugaacucCGGAAGCGGCUu -3' miRNA: 3'- -CCGUUG------CCGCGA----------CAU--------------GCUUUUGCCGA- -5' |
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9894 | 3' | -52.4 | NC_002641.1 | + | 140593 | 0.68 | 0.951251 |
Target: 5'- uGGCAAaccgacacaGGUcuGCUGUACGGAcuaauAugGGCa -3' miRNA: 3'- -CCGUUg--------CCG--CGACAUGCUU-----UugCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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