Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9936 | 5' | -52.6 | NC_002641.1 | + | 56081 | 1.14 | 0.003332 |
Target: 5'- uUCCAACCACUCAACAUCACCACGGGCa -3' miRNA: 3'- -AGGUUGGUGAGUUGUAGUGGUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 53067 | 0.75 | 0.647104 |
Target: 5'- gUCCAACCcguuuggcGCUCuAGCcauaggcuugauuGUCAUCGCGGGCa -3' miRNA: 3'- -AGGUUGG--------UGAG-UUG-------------UAGUGGUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 108721 | 0.73 | 0.730178 |
Target: 5'- gCUAACCGCaUGGCAUgC-CCGCGGGCg -3' miRNA: 3'- aGGUUGGUGaGUUGUA-GuGGUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 22721 | 0.72 | 0.806585 |
Target: 5'- uUCaAGCCGCUCAAuacauuuuuaguCGUUAUCACGGGUc -3' miRNA: 3'- -AGgUUGGUGAGUU------------GUAGUGGUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 98392 | 0.71 | 0.832794 |
Target: 5'- aUCCGGCCugUCGGCAgaaUGCCAaaGGGUu -3' miRNA: 3'- -AGGUUGGugAGUUGUa--GUGGUg-CCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 96273 | 0.71 | 0.836165 |
Target: 5'- aCCAACCACagcauccacuuauaCAACAUCACCACGu-- -3' miRNA: 3'- aGGUUGGUGa-------------GUUGUAGUGGUGCccg -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 153755 | 0.71 | 0.841163 |
Target: 5'- gUCCGACCGCUUccgcuacuAGCGaCACCGCGcgugccgcGGCg -3' miRNA: 3'- -AGGUUGGUGAG--------UUGUaGUGGUGC--------CCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 131277 | 0.71 | 0.849336 |
Target: 5'- uUCCAGCCAgCUaca-AUCugCACGGGa -3' miRNA: 3'- -AGGUUGGU-GAguugUAGugGUGCCCg -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 151195 | 0.71 | 0.849336 |
Target: 5'- uUCCAGCCAgCUaca-AUCugCACGGGa -3' miRNA: 3'- -AGGUUGGU-GAguugUAGugGUGCCCg -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 56019 | 0.71 | 0.865063 |
Target: 5'- gUCAAgCGCUCGgcauacauuuuGCGUCugCGCGcGGCa -3' miRNA: 3'- aGGUUgGUGAGU-----------UGUAGugGUGC-CCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 118061 | 0.7 | 0.879921 |
Target: 5'- -gCGGCCGaUCAGCG-CGCgGCGGGCc -3' miRNA: 3'- agGUUGGUgAGUUGUaGUGgUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 5661 | 0.7 | 0.879921 |
Target: 5'- -gCGGCCGaUCAGCG-CGCgGCGGGCc -3' miRNA: 3'- agGUUGGUgAGUUGUaGUGgUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 23850 | 0.7 | 0.900487 |
Target: 5'- aUUCAuauCCAC-CGGC-UCAUCGCGGGUa -3' miRNA: 3'- -AGGUu--GGUGaGUUGuAGUGGUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 71430 | 0.69 | 0.918892 |
Target: 5'- cUCCAauauACCcgucuuGCUCGcCGUCGCUauaaACGGGCa -3' miRNA: 3'- -AGGU----UGG------UGAGUuGUAGUGG----UGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 129132 | 0.69 | 0.918892 |
Target: 5'- uUCCAGCaCGCgagCGuagacaguaaagGCGUCAuCCGCGGGg -3' miRNA: 3'- -AGGUUG-GUGa--GU------------UGUAGU-GGUGCCCg -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 153340 | 0.69 | 0.918892 |
Target: 5'- uUCCAGCaCGCgagCGuagacaguaaagGCGUCAuCCGCGGGg -3' miRNA: 3'- -AGGUUG-GUGa--GU------------UGUAGU-GGUGCCCg -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 107432 | 0.69 | 0.924536 |
Target: 5'- cCCAAUacaaCAGCAUCA-CGCGGGCg -3' miRNA: 3'- aGGUUGgugaGUUGUAGUgGUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 96826 | 0.69 | 0.935081 |
Target: 5'- cUCCA--UACUCGGCGUCgACUugGGuGCu -3' miRNA: 3'- -AGGUugGUGAGUUGUAG-UGGugCC-CG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 112784 | 0.68 | 0.949053 |
Target: 5'- aUCCAcACUAUuagUCAGCAcuaGCgCGCGGGCg -3' miRNA: 3'- -AGGU-UGGUG---AGUUGUag-UG-GUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 152783 | 0.68 | 0.956781 |
Target: 5'- gCCGACCccaccgaAC-CAACAggaACCGCGGGg -3' miRNA: 3'- aGGUUGG-------UGaGUUGUag-UGGUGCCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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