miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9936 5' -52.6 NC_002641.1 + 5661 0.7 0.879921
Target:  5'- -gCGGCCGaUCAGCG-CGCgGCGGGCc -3'
miRNA:   3'- agGUUGGUgAGUUGUaGUGgUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 5791 0.66 0.984719
Target:  5'- gUCCGGCCGCgcccaGACAgggcggagacgUGCCACagGGGCu -3'
miRNA:   3'- -AGGUUGGUGag---UUGUa----------GUGGUG--CCCG- -5'
9936 5' -52.6 NC_002641.1 + 6082 0.66 0.978522
Target:  5'- cCCGcACCGCccguaCGACAUCGCCuCGGacGCg -3'
miRNA:   3'- aGGU-UGGUGa----GUUGUAGUGGuGCC--CG- -5'
9936 5' -52.6 NC_002641.1 + 22721 0.72 0.806585
Target:  5'- uUCaAGCCGCUCAAuacauuuuuaguCGUUAUCACGGGUc -3'
miRNA:   3'- -AGgUUGGUGAGUU------------GUAGUGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 23850 0.7 0.900487
Target:  5'- aUUCAuauCCAC-CGGC-UCAUCGCGGGUa -3'
miRNA:   3'- -AGGUu--GGUGaGUUGuAGUGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 31039 0.66 0.982024
Target:  5'- aUCCAGCCAUaauacCAAUGUaaguaguuacuuaGCCACGuGGCg -3'
miRNA:   3'- -AGGUUGGUGa----GUUGUAg------------UGGUGC-CCG- -5'
9936 5' -52.6 NC_002641.1 + 43676 0.68 0.958673
Target:  5'- cCCAACUACuUCAGCAgcaauacccacaaaCACCGCGGu- -3'
miRNA:   3'- aGGUUGGUG-AGUUGUa-------------GUGGUGCCcg -5'
9936 5' -52.6 NC_002641.1 + 53067 0.75 0.647104
Target:  5'- gUCCAACCcguuuggcGCUCuAGCcauaggcuugauuGUCAUCGCGGGCa -3'
miRNA:   3'- -AGGUUGG--------UGAG-UUG-------------UAGUGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 56019 0.71 0.865063
Target:  5'- gUCAAgCGCUCGgcauacauuuuGCGUCugCGCGcGGCa -3'
miRNA:   3'- aGGUUgGUGAGU-----------UGUAGugGUGC-CCG- -5'
9936 5' -52.6 NC_002641.1 + 56081 1.14 0.003332
Target:  5'- uUCCAACCACUCAACAUCACCACGGGCa -3'
miRNA:   3'- -AGGUUGGUGAGUUGUAGUGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 66814 0.67 0.973193
Target:  5'- aCCAAUCcCcCuACAUCugcaguauggacgGCCGCGGGCa -3'
miRNA:   3'- aGGUUGGuGaGuUGUAG-------------UGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 70171 0.67 0.964345
Target:  5'- --aAACUGCUUugcgguguGCAUUACCACGGGg -3'
miRNA:   3'- aggUUGGUGAGu-------UGUAGUGGUGCCCg -5'
9936 5' -52.6 NC_002641.1 + 71430 0.69 0.918892
Target:  5'- cUCCAauauACCcgucuuGCUCGcCGUCGCUauaaACGGGCa -3'
miRNA:   3'- -AGGU----UGG------UGAGUuGUAGUGG----UGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 85941 0.66 0.976092
Target:  5'- aUCCGGCaa--UAGCAUCGCCcUGGGUg -3'
miRNA:   3'- -AGGUUGgugaGUUGUAGUGGuGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 95616 0.66 0.980765
Target:  5'- -aCAGCCACauUCGACAcgaUCGCCuaauugaugugUGGGCg -3'
miRNA:   3'- agGUUGGUG--AGUUGU---AGUGGu----------GCCCG- -5'
9936 5' -52.6 NC_002641.1 + 96045 0.67 0.964345
Target:  5'- uUCCGAUCACcaUCAAaGUcCACCagGCGGGUu -3'
miRNA:   3'- -AGGUUGGUG--AGUUgUA-GUGG--UGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 96273 0.71 0.836165
Target:  5'- aCCAACCACagcauccacuuauaCAACAUCACCACGu-- -3'
miRNA:   3'- aGGUUGGUGa-------------GUUGUAGUGGUGCccg -5'
9936 5' -52.6 NC_002641.1 + 96826 0.69 0.935081
Target:  5'- cUCCA--UACUCGGCGUCgACUugGGuGCu -3'
miRNA:   3'- -AGGUugGUGAGUUGUAG-UGGugCC-CG- -5'
9936 5' -52.6 NC_002641.1 + 98392 0.71 0.832794
Target:  5'- aUCCGGCCugUCGGCAgaaUGCCAaaGGGUu -3'
miRNA:   3'- -AGGUUGGugAGUUGUa--GUGGUg-CCCG- -5'
9936 5' -52.6 NC_002641.1 + 107432 0.69 0.924536
Target:  5'- cCCAAUacaaCAGCAUCA-CGCGGGCg -3'
miRNA:   3'- aGGUUGgugaGUUGUAGUgGUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.