Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9936 | 5' | -52.6 | NC_002641.1 | + | 108721 | 0.73 | 0.730178 |
Target: 5'- gCUAACCGCaUGGCAUgC-CCGCGGGCg -3' miRNA: 3'- aGGUUGGUGaGUUGUA-GuGGUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 96045 | 0.67 | 0.964345 |
Target: 5'- uUCCGAUCACcaUCAAaGUcCACCagGCGGGUu -3' miRNA: 3'- -AGGUUGGUG--AGUUgUA-GUGG--UGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 154149 | 0.67 | 0.9676 |
Target: 5'- cUCCGcauCCACcgCAGCAaaCGCCugGGGa -3' miRNA: 3'- -AGGUu--GGUGa-GUUGUa-GUGGugCCCg -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 149030 | 0.66 | 0.984719 |
Target: 5'- aUCgCGGgaGCUCGGauuuguagCGCCGCGGGCa -3' miRNA: 3'- -AG-GUUggUGAGUUgua-----GUGGUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 151195 | 0.71 | 0.849336 |
Target: 5'- uUCCAGCCAgCUaca-AUCugCACGGGa -3' miRNA: 3'- -AGGUUGGU-GAguugUAGugGUGCCCg -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 56019 | 0.71 | 0.865063 |
Target: 5'- gUCAAgCGCUCGgcauacauuuuGCGUCugCGCGcGGCa -3' miRNA: 3'- aGGUUgGUGAGU-----------UGUAGugGUGC-CCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 23850 | 0.7 | 0.900487 |
Target: 5'- aUUCAuauCCAC-CGGC-UCAUCGCGGGUa -3' miRNA: 3'- -AGGUu--GGUGaGUUGuAGUGGUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 129132 | 0.69 | 0.918892 |
Target: 5'- uUCCAGCaCGCgagCGuagacaguaaagGCGUCAuCCGCGGGg -3' miRNA: 3'- -AGGUUG-GUGa--GU------------UGUAGU-GGUGCCCg -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 96826 | 0.69 | 0.935081 |
Target: 5'- cUCCA--UACUCGGCGUCgACUugGGuGCu -3' miRNA: 3'- -AGGUugGUGAGUUGUAG-UGGugCC-CG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 70171 | 0.67 | 0.964345 |
Target: 5'- --aAACUGCUUugcgguguGCAUUACCACGGGg -3' miRNA: 3'- aggUUGGUGAGu-------UGUAGUGGUGCCCg -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 112784 | 0.68 | 0.949053 |
Target: 5'- aUCCAcACUAUuagUCAGCAcuaGCgCGCGGGCg -3' miRNA: 3'- -AGGU-UGGUG---AGUUGUag-UG-GUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 107432 | 0.69 | 0.924536 |
Target: 5'- cCCAAUacaaCAGCAUCA-CGCGGGCg -3' miRNA: 3'- aGGUUGgugaGUUGUAGUgGUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 22721 | 0.72 | 0.806585 |
Target: 5'- uUCaAGCCGCUCAAuacauuuuuaguCGUUAUCACGGGUc -3' miRNA: 3'- -AGgUUGGUGAGUU------------GUAGUGGUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 129690 | 0.68 | 0.956781 |
Target: 5'- gCCGACCccaccgaAC-CAACAggaACCGCGGGg -3' miRNA: 3'- aGGUUGG-------UGaGUUGUag-UGGUGCCCg -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 98392 | 0.71 | 0.832794 |
Target: 5'- aUCCGGCCugUCGGCAgaaUGCCAaaGGGUu -3' miRNA: 3'- -AGGUUGGugAGUUGUa--GUGGUg-CCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 71430 | 0.69 | 0.918892 |
Target: 5'- cUCCAauauACCcgucuuGCUCGcCGUCGCUauaaACGGGCa -3' miRNA: 3'- -AGGU----UGG------UGAGUuGUAGUGG----UGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 152046 | 0.67 | 0.963326 |
Target: 5'- aCCGAcCCACUCGcgcaacgaaagcccGCcUCACCcauCGGGUu -3' miRNA: 3'- aGGUU-GGUGAGU--------------UGuAGUGGu--GCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 153591 | 0.67 | 0.9676 |
Target: 5'- gUCgGACCGCUUgucgGACAUagcgcggaaCGCgCAUGGGCu -3' miRNA: 3'- -AGgUUGGUGAG----UUGUA---------GUG-GUGCCCG- -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 96273 | 0.71 | 0.836165 |
Target: 5'- aCCAACCACagcauccacuuauaCAACAUCACCACGu-- -3' miRNA: 3'- aGGUUGGUGa-------------GUUGUAGUGGUGCccg -5' |
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9936 | 5' | -52.6 | NC_002641.1 | + | 118061 | 0.7 | 0.879921 |
Target: 5'- -gCGGCCGaUCAGCG-CGCgGCGGGCc -3' miRNA: 3'- agGUUGGUgAGUUGUaGUGgUGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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