miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429963 NC_005808.1 Bordetella phage BMP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26711 + 27940 86 21.5 -23.6 NP_996591 5' arm      3' arm
26712 + 30382 89 20.5 -22 NP_996592 5' arm      3' arm
26713 + 30550 89 20.5 -23.3 NP_996593 5' arm      3' arm
26714 + 30645 89 24 -27.4 NP_996593 5' arm      3' arm
26715 + 31277 84 20 -25.1 NP_996594 5' arm      3' arm
26716 + 31564 89 19.5 -22.3 NP_996595 5' arm      3' arm
26717 + 33064 87 21.5 -26.6 NP_996598 5' arm      3' arm
26718 + 33777 90 19.5 -25.4 NP_996598 5' arm      3' arm
26719 + 34339 87 19.5 -20.5 NP_996600 5' arm      3' arm
26720 + 35149 89 19.5 -23.5 NP_996600 5' arm      3' arm
26721 + 36684 88 22 -28.4 NP_996604 5' arm      3' arm
26722 + 37768 89 20.5 -25.4 NP_996604 5' arm      3' arm
26723 + 38906 90 19.5 -25.7 NP_996605 5' arm      3' arm
26724 + 39512 87 20 -26.8 NP_996607 5' arm      3' arm
26725 + 40248 90 23 -21.7 NP_996608 5' arm      3' arm
26726 + 40537 90 19.5 -23.2 NP_996608 5' arm      3' arm
26727 + 40886 90 19.5 -29.5 NP_996608 5' arm      3' arm
26728 - 419 88 21.5 -21.7 NP_996564 5' arm      3' arm
26729 - 1050 90 20 -25.3 NP_996565 5' arm      3' arm
26730 - 1495 90 20 -28.1 NP_996566 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.