miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38229112 NC_005178.1 Bacteriophage D3112

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23130 - 20776 86 22.5 -37.2 NP_938240 5' arm      3' arm
23132 - 21056 89 21 -21.7 NP_938241 5' arm      3' arm
23131 - 20959 89 23 -19.6 NP_938241 5' arm      3' arm
23133 - 21242 90 22.5 -19.9 NP_938241 5' arm      3' arm
23135 - 22092 90 24.5 -21.9 NP_938242 5' arm      3' arm
23134 - 21469 89 23.5 -25 NP_938242 5' arm      3' arm
23136 - 22187 90 19.5 -20.2 NP_938242 5' arm      3' arm
23040 + 22135 89 20 -22.1 NP_938242 5' arm      3' arm
23041 + 22288 89 20 -24.9 NP_938243 5' arm      3' arm
23138 - 22819 88 22 -27.2 NP_938244 5' arm      3' arm
23137 - 22720 90 21 -22.4 NP_938244 5' arm      3' arm
23139 - 23189 85 20 -22.4 NP_938245 5' arm      3' arm
23042 + 23487 90 20.5 -22.3 NP_938246 5' arm      3' arm
23140 - 23825 90 21.5 -21.8 NP_938247 5' arm      3' arm
23142 - 24333 90 22 -29.1 NP_938248 5' arm      3' arm
23141 - 24090 90 20.5 -31.5 NP_938248 5' arm      3' arm
23043 + 23936 88 20 -20 NP_938248 5' arm      3' arm
23045 + 24553 87 19 -23.4 NP_938248 5' arm      3' arm
23044 + 24413 90 19 -25.2 NP_938248 5' arm      3' arm
23143 - 24631 89 25 -30.9 NP_938248 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.