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GenBank Identifier | RefSeq Acc. | Name |
38229112 | NC_005178.1 | Bacteriophage D3112 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
23107 | - | 14069 | 89 | 23 | -24.5 | NP_938233 | 5' arm 3' arm | ||
23034 | + | 15050 | 89 | 20.5 | -24.2 | NP_938233 | 5' arm 3' arm | ||
23108 | - | 14209 | 88 | 19.5 | -27.6 | NP_938233 | 5' arm 3' arm | ||
23112 | - | 15618 | 90 | 25 | -29.1 | NP_938234 | 5' arm 3' arm | ||
23036 | + | 16564 | 90 | 19.5 | -21.7 | NP_938234 | 5' arm 3' arm | ||
23113 | - | 16024 | 85 | 20 | -20.7 | NP_938234 | 5' arm 3' arm | ||
23115 | - | 16257 | 90 | 21.5 | -21.4 | NP_938234 | 5' arm 3' arm | ||
23114 | - | 16162 | 87 | 20 | -20.3 | NP_938234 | 5' arm 3' arm | ||
23111 | - | 15515 | 87 | 21 | -23.1 | NP_938234 | 5' arm 3' arm | ||
23037 | + | 16751 | 90 | 22 | -27.3 | NP_938234 | 5' arm 3' arm | ||
23117 | - | 16908 | 90 | 21 | -30 | NP_938234 | 5' arm 3' arm | ||
23116 | - | 16796 | 90 | 21 | -26.1 | NP_938234 | 5' arm 3' arm | ||
23118 | - | 17019 | 90 | 21 | -20 | NP_938234 | 5' arm 3' arm | ||
23120 | - | 17588 | 87 | 21 | -21.4 | NP_938235 | 5' arm 3' arm | ||
23119 | - | 17473 | 88 | 24 | -26.8 | NP_938235 | 5' arm 3' arm | ||
23121 | - | 18036 | 90 | 22.5 | -29 | NP_938235 | 5' arm 3' arm | ||
23038 | + | 18135 | 90 | 24 | -20.7 | NP_938235 | 5' arm 3' arm | ||
23122 | - | 18769 | 90 | 20 | -19.7 | NP_938236 | 5' arm 3' arm | ||
23130 | - | 20776 | 86 | 22.5 | -37.2 | NP_938240 | 5' arm 3' arm | ||
23128 | - | 20094 | 90 | 20 | -25.5 | NP_938240 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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