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| GenBank Identifier | RefSeq Acc. | Name |
| 45429963 | NC_005808.1 | Bordetella phage BMP-1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 26680 | + | 16704 | 84 | 21 | -22.8 | NP_996575 | 5' arm 3' arm | ||
| 26749 | - | 17321 | 80 | 20 | -25.3 | NP_996576 | 5' arm 3' arm | ||
| 26684 | + | 17778 | 90 | 19 | -23.2 | NP_996576 | 5' arm 3' arm | ||
| 26683 | + | 17573 | 89 | 22.5 | -33.8 | NP_996576 | 5' arm 3' arm | ||
| 26751 | - | 18191 | 90 | 21 | -30.6 | NP_996577 | 5' arm 3' arm | ||
| 26686 | + | 18535 | 88 | 22 | -21.8 | NP_996578 | 5' arm 3' arm | ||
| 26685 | + | 18408 | 90 | 22.5 | -23.1 | NP_996578 | 5' arm 3' arm | ||
| 26752 | - | 18497 | 90 | 21 | -27.1 | NP_996578 | 5' arm 3' arm | ||
| 26689 | + | 19532 | 89 | 23.5 | -27 | NP_996579 | 5' arm 3' arm | ||
| 26687 | + | 18940 | 89 | 20.5 | -19.8 | NP_996579 | 5' arm 3' arm | ||
| 26688 | + | 19264 | 85 | 22.5 | -23.4 | NP_996579 | 5' arm 3' arm | ||
| 26753 | - | 19002 | 89 | 19.5 | -20.3 | NP_996579 | 5' arm 3' arm | ||
| 26754 | - | 20061 | 90 | 20.5 | -22.2 | NP_996580 | 5' arm 3' arm | ||
| 26692 | + | 20013 | 88 | 20.5 | -27.6 | NP_996580 | 5' arm 3' arm | ||
| 26693 | + | 20254 | 89 | 26 | -23.1 | NP_996580 | 5' arm 3' arm | ||
| 26690 | + | 19800 | 88 | 21.5 | -31.6 | NP_996580 | 5' arm 3' arm | ||
| 26691 | + | 19919 | 85 | 19.5 | -19.6 | NP_996580 | 5' arm 3' arm | ||
| 26756 | - | 22048 | 88 | 20.5 | -22.4 | NP_996583 | 5' arm 3' arm | ||
| 26695 | + | 21064 | 88 | 22 | -20.4 | NP_996583 | 5' arm 3' arm | ||
| 26701 | + | 22667 | 89 | 21.5 | -27.2 | NP_996583 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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