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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 11137 | - | 183327 | 84 | 20.5 | -25.1 | NP_116475 | 5' arm 3' arm | ||
| 10899 | + | 183908 | 87 | 19.5 | -26.6 | NP_116475 | 5' arm 3' arm | ||
| 11135 | - | 182274 | 89 | 19.5 | -22.3 | NP_116473 | 5' arm 3' arm | ||
| 11134 | - | 181948 | 88 | 21 | -19.5 | NP_116473 | 5' arm 3' arm | ||
| 10897 | + | 180916 | 90 | 21 | -19.5 | NP_116471 | 5' arm 3' arm | ||
| 10894 | + | 180118 | 82 | 23 | -23.3 | NP_116470 | 5' arm 3' arm | ||
| 11131 | - | 177786 | 89 | 20 | -21.1 | NP_116468 | 5' arm 3' arm | ||
| 11132 | - | 178589 | 89 | 20 | -23.4 | NP_116468 | 5' arm 3' arm | ||
| 11130 | - | 177585 | 90 | 20.5 | -19.8 | NP_116467 | 5' arm 3' arm | ||
| 10891 | + | 176706 | 89 | 19 | -23.2 | NP_116467 | 5' arm 3' arm | ||
| 11129 | - | 176818 | 87 | 19 | -26.7 | NP_116467 | 5' arm 3' arm | ||
| 10892 | + | 176823 | 87 | 21.5 | -20.9 | NP_116467 | 5' arm 3' arm | ||
| 10889 | + | 175744 | 90 | 22 | -27.3 | NP_116466 | 5' arm 3' arm | ||
| 10890 | + | 175892 | 89 | 19 | -24.8 | NP_116466 | 5' arm 3' arm | ||
| 11128 | - | 176233 | 89 | 19 | -26.7 | NP_116466 | 5' arm 3' arm | ||
| 10888 | + | 175542 | 89 | 24 | -23.1 | NP_116465 | 5' arm 3' arm | ||
| 10887 | + | 174782 | 89 | 24 | -33.9 | NP_116465 | 5' arm 3' arm | ||
| 10884 | + | 173017 | 89 | 29 | -35.5 | NP_116464 | 5' arm 3' arm | ||
| 11126 | - | 173105 | 85 | 22.5 | -25.9 | NP_116464 | 5' arm 3' arm | ||
| 11125 | - | 172426 | 89 | 21 | -23.6 | NP_116464 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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