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| GenBank Identifier | RefSeq Acc. | Name |
| 30984428 | NC_004812.1 | Cercopithecine herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 21526 | + | 112139 | 87 | 26 | -20 | NP_851914 | 5' arm 3' arm | ||
| 21523 | + | 111681 | 90 | 24 | -20.3 | NP_851914 | 5' arm 3' arm | ||
| 21525 | + | 112015 | 89 | 19.5 | -26.4 | NP_851914 | 5' arm 3' arm | ||
| 21522 | + | 111304 | 86 | 22 | -20.3 | NP_851914 | 5' arm 3' arm | ||
| 21524 | + | 111786 | 90 | 19 | -22.1 | NP_851914 | 5' arm 3' arm | ||
| 21696 | - | 112018 | 85 | 19 | -22.6 | NP_851914 | 5' arm 3' arm | ||
| 21695 | - | 110001 | 90 | 19.5 | -21 | NP_851913 | 5' arm 3' arm | ||
| 21519 | + | 108380 | 89 | 20.5 | -32.5 | NP_851913 | 5' arm 3' arm | ||
| 21521 | + | 110510 | 87 | 20 | -23.4 | NP_851913 | 5' arm 3' arm | ||
| 21694 | - | 109761 | 90 | 19.5 | -27.3 | NP_851913 | 5' arm 3' arm | ||
| 21520 | + | 109912 | 90 | 20.5 | -21.4 | NP_851913 | 5' arm 3' arm | ||
| 21693 | - | 108983 | 87 | 20 | -24.2 | NP_851913 | 5' arm 3' arm | ||
| 21692 | - | 108854 | 90 | 20 | -23.6 | NP_851913 | 5' arm 3' arm | ||
| 21516 | + | 107437 | 81 | 26.5 | -26.3 | NP_851912 | 5' arm 3' arm | ||
| 21517 | + | 107595 | 89 | 20 | -26.5 | NP_851912 | 5' arm 3' arm | ||
| 21691 | - | 107694 | 90 | 21 | -27 | NP_851912 | 5' arm 3' arm | ||
| 21515 | + | 106863 | 90 | 22 | -29.1 | NP_851911 | 5' arm 3' arm | ||
| 21690 | - | 107060 | 86 | 19 | -19.5 | NP_851911 | 5' arm 3' arm | ||
| 21514 | + | 106252 | 90 | 21 | -28.3 | NP_851911 | 5' arm 3' arm | ||
| 21510 | + | 103056 | 90 | 22.5 | -29.8 | NP_851908 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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