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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23818 | - | 97404 | 90 | 21 | -22.2 | NP_954943 | 5' arm 3' arm | ||
| 23812 | - | 93718 | 89 | 24.5 | -32.6 | NP_954942 | 5' arm 3' arm | ||
| 23814 | - | 95134 | 90 | 23 | -22.7 | NP_954942 | 5' arm 3' arm | ||
| 23655 | + | 93775 | 79 | 19 | -23.4 | NP_954942 | 5' arm 3' arm | ||
| 23656 | + | 95247 | 87 | 23.5 | -21.9 | NP_954942 | 5' arm 3' arm | ||
| 23657 | + | 95427 | 90 | 20 | -26 | NP_954942 | 5' arm 3' arm | ||
| 23813 | - | 93957 | 88 | 20.5 | -27.1 | NP_954942 | 5' arm 3' arm | ||
| 23811 | - | 93358 | 89 | 21 | -30.3 | NP_954941 | 5' arm 3' arm | ||
| 23654 | + | 93270 | 89 | 21 | -27.2 | NP_954941 | 5' arm 3' arm | ||
| 23809 | - | 92805 | 89 | 20 | -25.1 | NP_954941 | 5' arm 3' arm | ||
| 23810 | - | 93001 | 87 | 20.5 | -26.4 | NP_954941 | 5' arm 3' arm | ||
| 23653 | + | 92767 | 87 | 19 | -27.7 | NP_954941 | 5' arm 3' arm | ||
| 23807 | - | 90568 | 88 | 19 | -31 | NP_954940 | 5' arm 3' arm | ||
| 23651 | + | 91422 | 90 | 19.5 | -19.7 | NP_954940 | 5' arm 3' arm | ||
| 23652 | + | 92399 | 89 | 21 | -20.5 | NP_954940 | 5' arm 3' arm | ||
| 23808 | - | 90874 | 90 | 21.5 | -20.2 | NP_954940 | 5' arm 3' arm | ||
| 23650 | + | 89544 | 90 | 20 | -28.1 | NP_954939 | 5' arm 3' arm | ||
| 23806 | - | 88994 | 90 | 19.5 | -21.2 | NP_954939 | 5' arm 3' arm | ||
| 23805 | - | 88637 | 89 | 21 | -19.4 | NP_954939 | 5' arm 3' arm | ||
| 23648 | + | 88137 | 90 | 23 | -20.8 | NP_954939 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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