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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23824 | - | 104229 | 88 | 19 | -24.7 | NP_954951 | 5' arm 3' arm | ||
| 23672 | + | 104044 | 88 | 21 | -24.1 | NP_954951 | 5' arm 3' arm | ||
| 23667 | + | 102128 | 86 | 19.5 | -29.4 | NP_954950 | 5' arm 3' arm | ||
| 23823 | - | 101068 | 90 | 20 | -32.5 | NP_954949 | 5' arm 3' arm | ||
| 23666 | + | 101223 | 90 | 20 | -21.8 | NP_954949 | 5' arm 3' arm | ||
| 23821 | - | 100161 | 88 | 21 | -27.1 | NP_954947 | 5' arm 3' arm | ||
| 23665 | + | 100258 | 89 | 19.5 | -25.9 | NP_954947 | 5' arm 3' arm | ||
| 23822 | - | 100337 | 89 | 19 | -26.2 | NP_954947 | 5' arm 3' arm | ||
| 23664 | + | 100154 | 89 | 24 | -28.5 | NP_954947 | 5' arm 3' arm | ||
| 23663 | + | 99461 | 87 | 20.5 | -23.3 | NP_954946 | 5' arm 3' arm | ||
| 23662 | + | 99252 | 89 | 22 | -26 | NP_954946 | 5' arm 3' arm | ||
| 23820 | - | 98582 | 90 | 22.5 | -32.5 | NP_954944 | 5' arm 3' arm | ||
| 23659 | + | 96261 | 88 | 20.5 | -33.6 | NP_954943 | 5' arm 3' arm | ||
| 23661 | + | 97483 | 90 | 22.5 | -26.3 | NP_954943 | 5' arm 3' arm | ||
| 23658 | + | 96149 | 89 | 20 | -20.4 | NP_954943 | 5' arm 3' arm | ||
| 23815 | - | 96382 | 90 | 22.5 | -34.7 | NP_954943 | 5' arm 3' arm | ||
| 23819 | - | 97648 | 89 | 20 | -22.1 | NP_954943 | 5' arm 3' arm | ||
| 23816 | - | 96728 | 89 | 20.5 | -24 | NP_954943 | 5' arm 3' arm | ||
| 23660 | + | 96639 | 90 | 19 | -24 | NP_954943 | 5' arm 3' arm | ||
| 23818 | - | 97404 | 90 | 21 | -22.2 | NP_954943 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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