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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23558 | + | 3677 | 87 | 20.5 | -23.8 | NP_954894 | 5' arm 3' arm | ||
| 23708 | - | 5626 | 90 | 22.5 | -24.8 | NP_954895 | 5' arm 3' arm | ||
| 23709 | - | 7888 | 84 | 21 | -27.3 | NP_954895 | 5' arm 3' arm | ||
| 23560 | + | 6653 | 90 | 20 | -22.4 | NP_954895 | 5' arm 3' arm | ||
| 23559 | + | 6188 | 89 | 22.5 | -31.3 | NP_954895 | 5' arm 3' arm | ||
| 23711 | - | 8333 | 87 | 21.5 | -22.7 | NP_954896 | 5' arm 3' arm | ||
| 23710 | - | 8211 | 89 | 19.5 | -19.5 | NP_954896 | 5' arm 3' arm | ||
| 23561 | + | 8994 | 90 | 19.5 | -33.8 | NP_954897 | 5' arm 3' arm | ||
| 23714 | - | 9770 | 90 | 19.5 | -27.5 | NP_954897 | 5' arm 3' arm | ||
| 23562 | + | 9216 | 88 | 20 | -20.73 | NP_954897 | 5' arm 3' arm | ||
| 23713 | - | 9522 | 90 | 24 | -25.9 | NP_954897 | 5' arm 3' arm | ||
| 23712 | - | 9130 | 89 | 20.5 | -20.4 | NP_954897 | 5' arm 3' arm | ||
| 23564 | + | 11584 | 84 | 24 | -23.3 | NP_954900 | 5' arm 3' arm | ||
| 23563 | + | 11492 | 87 | 19 | -20.6 | NP_954900 | 5' arm 3' arm | ||
| 23565 | + | 11824 | 89 | 21.5 | -23.5 | NP_954900 | 5' arm 3' arm | ||
| 23716 | - | 12425 | 90 | 20.5 | -29.4 | NP_954900 | 5' arm 3' arm | ||
| 23721 | - | 14919 | 90 | 19 | -22.5 | NP_954901 | 5' arm 3' arm | ||
| 23718 | - | 13962 | 83 | 19 | -28.3 | NP_954901 | 5' arm 3' arm | ||
| 23717 | - | 13125 | 90 | 26 | -23.02 | NP_954901 | 5' arm 3' arm | ||
| 23719 | - | 14295 | 86 | 21 | -25.3 | NP_954901 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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