miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38639896 NC_005261.1 Bovine herpesvirus 5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23566 + 14616 90 22.5 -19.4 NP_954901 5' arm      3' arm
23570 + 16086 90 22 -20.26 NP_954902 5' arm      3' arm
23569 + 15811 88 21.5 -25.2 NP_954902 5' arm      3' arm
23568 + 15540 88 19.5 -22.6 NP_954902 5' arm      3' arm
23571 + 16219 89 19 -20.5 NP_954902 5' arm      3' arm
23572 + 21180 87 20.5 -30.3 NP_954905 5' arm      3' arm
23574 + 22447 85 20.5 -20.9 NP_954906 5' arm      3' arm
23573 + 21289 74 19.5 -32.4 NP_954905 5' arm      3' arm
23583 + 26296 89 22.5 -19.9 NP_954908 5' arm      3' arm
23576 + 23416 90 21 -20.3 NP_954907 5' arm      3' arm
23577 + 23748 90 21 -19.5 NP_954907 5' arm      3' arm
23578 + 24034 88 20.5 -25.2 NP_954907 5' arm      3' arm
23580 + 24278 90 20.5 -25.4 NP_954907 5' arm      3' arm
23584 + 27194 89 20.5 -31.5 NP_954909 5' arm      3' arm
23575 + 22987 90 19.5 -22.8 NP_954906 5' arm      3' arm
23579 + 24189 86 19.5 -26.2 NP_954907 5' arm      3' arm
23582 + 25802 90 19.5 -24.8 NP_954908 5' arm      3' arm
23581 + 24544 90 19 -23.1 NP_954908 5' arm      3' arm
23588 + 31032 90 23 -27.1 NP_954910 5' arm      3' arm
23587 + 29616 89 21 -25.5 NP_954910 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.