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GenBank Identifier | RefSeq Acc. | Name |
38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
23566 | + | 14616 | 90 | 22.5 | -19.4 | NP_954901 | 5' arm 3' arm | ||
23570 | + | 16086 | 90 | 22 | -20.26 | NP_954902 | 5' arm 3' arm | ||
23569 | + | 15811 | 88 | 21.5 | -25.2 | NP_954902 | 5' arm 3' arm | ||
23568 | + | 15540 | 88 | 19.5 | -22.6 | NP_954902 | 5' arm 3' arm | ||
23571 | + | 16219 | 89 | 19 | -20.5 | NP_954902 | 5' arm 3' arm | ||
23572 | + | 21180 | 87 | 20.5 | -30.3 | NP_954905 | 5' arm 3' arm | ||
23574 | + | 22447 | 85 | 20.5 | -20.9 | NP_954906 | 5' arm 3' arm | ||
23573 | + | 21289 | 74 | 19.5 | -32.4 | NP_954905 | 5' arm 3' arm | ||
23583 | + | 26296 | 89 | 22.5 | -19.9 | NP_954908 | 5' arm 3' arm | ||
23576 | + | 23416 | 90 | 21 | -20.3 | NP_954907 | 5' arm 3' arm | ||
23577 | + | 23748 | 90 | 21 | -19.5 | NP_954907 | 5' arm 3' arm | ||
23578 | + | 24034 | 88 | 20.5 | -25.2 | NP_954907 | 5' arm 3' arm | ||
23580 | + | 24278 | 90 | 20.5 | -25.4 | NP_954907 | 5' arm 3' arm | ||
23584 | + | 27194 | 89 | 20.5 | -31.5 | NP_954909 | 5' arm 3' arm | ||
23575 | + | 22987 | 90 | 19.5 | -22.8 | NP_954906 | 5' arm 3' arm | ||
23579 | + | 24189 | 86 | 19.5 | -26.2 | NP_954907 | 5' arm 3' arm | ||
23582 | + | 25802 | 90 | 19.5 | -24.8 | NP_954908 | 5' arm 3' arm | ||
23581 | + | 24544 | 90 | 19 | -23.1 | NP_954908 | 5' arm 3' arm | ||
23588 | + | 31032 | 90 | 23 | -27.1 | NP_954910 | 5' arm 3' arm | ||
23587 | + | 29616 | 89 | 21 | -25.5 | NP_954910 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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