miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38639896 NC_005261.1 Bovine herpesvirus 5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23623 + 61564 90 19.5 -29.1 NP_954921 5' arm      3' arm
23685 + 119021 90 22.5 -29.1 NP_954957 5' arm      3' arm
23639 + 81542 87 20 -29.1 NP_954931 5' arm      3' arm
23767 - 58159 90 19.5 -29 NP_954920 5' arm      3' arm
23735 - 25024 81 21 -29 NP_954908 5' arm      3' arm
23692 + 125613 90 19.5 -28.9 NP_954961 5' arm      3' arm
23627 + 70600 90 23.5 -28.9 NP_954928 5' arm      3' arm
23755 - 47625 86 21.5 -28.81 NP_954917 5' arm      3' arm
23631 + 72600 90 23 -28.8 NP_954929       
23687 + 119923 90 23 -28.8 NP_954958 5' arm      3' arm
23763 - 57153 90 20.5 -28.8 NP_954920 5' arm      3' arm
23632 + 72742 89 20.5 -28.7 NP_954929 5' arm      3' arm
23613 + 55421 90 22.5 -28.5 NP_954919 5' arm      3' arm
23803 - 86081 90 23.5 -28.5 NP_954937 5' arm      3' arm
23664 + 100154 89 24 -28.5 NP_954947 5' arm      3' arm
23593 + 41682 89 20 -28.5 NP_954911 5' arm      3' arm
23797 - 82659 87 20 -28.5 NP_954934 5' arm      3' arm
23718 - 13962 83 19 -28.3 NP_954901 5' arm      3' arm
23690 + 123506 90 19.5 -28.2 NP_954960 5' arm      3' arm
23650 + 89544 90 20 -28.1 NP_954939 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.