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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23639 | + | 81542 | 87 | 20 | -29.1 | NP_954931 | 5' arm 3' arm | ||
| 23685 | + | 119021 | 90 | 22.5 | -29.1 | NP_954957 | 5' arm 3' arm | ||
| 23623 | + | 61564 | 90 | 19.5 | -29.1 | NP_954921 | 5' arm 3' arm | ||
| 23767 | - | 58159 | 90 | 19.5 | -29 | NP_954920 | 5' arm 3' arm | ||
| 23735 | - | 25024 | 81 | 21 | -29 | NP_954908 | 5' arm 3' arm | ||
| 23692 | + | 125613 | 90 | 19.5 | -28.9 | NP_954961 | 5' arm 3' arm | ||
| 23627 | + | 70600 | 90 | 23.5 | -28.9 | NP_954928 | 5' arm 3' arm | ||
| 23755 | - | 47625 | 86 | 21.5 | -28.81 | NP_954917 | 5' arm 3' arm | ||
| 23631 | + | 72600 | 90 | 23 | -28.8 | NP_954929 | |||
| 23687 | + | 119923 | 90 | 23 | -28.8 | NP_954958 | 5' arm 3' arm | ||
| 23763 | - | 57153 | 90 | 20.5 | -28.8 | NP_954920 | 5' arm 3' arm | ||
| 23632 | + | 72742 | 89 | 20.5 | -28.7 | NP_954929 | 5' arm 3' arm | ||
| 23664 | + | 100154 | 89 | 24 | -28.5 | NP_954947 | 5' arm 3' arm | ||
| 23613 | + | 55421 | 90 | 22.5 | -28.5 | NP_954919 | 5' arm 3' arm | ||
| 23593 | + | 41682 | 89 | 20 | -28.5 | NP_954911 | 5' arm 3' arm | ||
| 23797 | - | 82659 | 87 | 20 | -28.5 | NP_954934 | 5' arm 3' arm | ||
| 23803 | - | 86081 | 90 | 23.5 | -28.5 | NP_954937 | 5' arm 3' arm | ||
| 23718 | - | 13962 | 83 | 19 | -28.3 | NP_954901 | 5' arm 3' arm | ||
| 23690 | + | 123506 | 90 | 19.5 | -28.2 | NP_954960 | 5' arm 3' arm | ||
| 23650 | + | 89544 | 90 | 20 | -28.1 | NP_954939 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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