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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23605 | + | 51312 | 90 | 24 | -30.9 | NP_954918 | 5' arm 3' arm | ||
| 23638 | + | 80709 | 90 | 23.5 | -30.8 | NP_954933 | 5' arm 3' arm | ||
| 23641 | + | 82386 | 90 | 23.5 | -30.5 | NP_954934 | 5' arm 3' arm | ||
| 23796 | - | 82553 | 87 | 19 | -30.4 | NP_954934 | 5' arm 3' arm | ||
| 23780 | - | 70291 | 90 | 24 | -30.4 | NP_954927 | 5' arm 3' arm | ||
| 23811 | - | 93358 | 89 | 21 | -30.3 | NP_954941 | 5' arm 3' arm | ||
| 23572 | + | 21180 | 87 | 20.5 | -30.3 | NP_954905 | 5' arm 3' arm | ||
| 23740 | - | 26568 | 89 | 23.5 | -30.3 | NP_954908 | 5' arm 3' arm | ||
| 23791 | - | 80798 | 90 | 21.5 | -30.1 | NP_954933 | 5' arm 3' arm | ||
| 23598 | + | 46305 | 90 | 22 | -29.9 | NP_954916 | 5' arm 3' arm | ||
| 23789 | - | 76947 | 90 | 21 | -29.9 | NP_954931 | 5' arm 3' arm | ||
| 23787 | - | 75056 | 90 | 22 | -29.8 | NP_954929 | 5' arm 3' arm | ||
| 23675 | + | 111964 | 88 | 21.5 | -29.8 | 5' arm 3' arm | |||
| 23856 | - | 131049 | 88 | 21.5 | -29.8 | 5' arm 3' arm | |||
| 23781 | - | 71419 | 90 | 20 | -29.8 | NP_954929 | 5' arm 3' arm | ||
| 23634 | + | 73626 | 88 | 23 | -29.6 | NP_954929 | |||
| 23804 | - | 87979 | 89 | 19 | -29.5 | NP_954939 | 5' arm 3' arm | ||
| 23667 | + | 102128 | 86 | 19.5 | -29.4 | NP_954950 | 5' arm 3' arm | ||
| 23844 | - | 120860 | 80 | 23.5 | -29.4 | NP_954958 | 5' arm 3' arm | ||
| 23716 | - | 12425 | 90 | 20.5 | -29.4 | NP_954900 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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