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GenBank Identifier | RefSeq Acc. | Name |
38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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ID | strand | start position | length | sRNA loop score |
core MFE.![]() |
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
23852 | - | 127576 | 90 | 22 | -37.3 | NP_954963 | 5' arm 3' arm | ||
23679 | + | 115437 | 90 | 22 | -37.3 | NP_954954 | 5' arm 3' arm | ||
23815 | - | 96382 | 90 | 22.5 | -34.7 | NP_954943 | 5' arm 3' arm | ||
23567 | + | 14806 | 87 | 23 | -34.3 | NP_954901 | 5' arm 3' arm | ||
23611 | + | 53704 | 90 | 22.5 | -34 | NP_954918 | 5' arm 3' arm | ||
23561 | + | 8994 | 90 | 19.5 | -33.8 | NP_954897 | 5' arm 3' arm | ||
23659 | + | 96261 | 88 | 20.5 | -33.6 | NP_954943 | 5' arm 3' arm | ||
23668 | + | 102748 | 90 | 24 | -33.6 | 5' arm 3' arm | |||
23696 | + | 127487 | 90 | 20.5 | -33.3 | NP_954963 | 5' arm 3' arm | ||
23833 | - | 115526 | 90 | 20.5 | -33.3 | NP_954954 | 5' arm 3' arm | ||
23625 | + | 65200 | 88 | 23 | -33.2 | NP_954925 | 5' arm 3' arm | ||
23812 | - | 93718 | 89 | 24.5 | -32.6 | NP_954942 | 5' arm 3' arm | ||
23823 | - | 101068 | 90 | 20 | -32.5 | NP_954949 | 5' arm 3' arm | ||
23820 | - | 98582 | 90 | 22.5 | -32.5 | NP_954944 | 5' arm 3' arm | ||
23573 | + | 21289 | 74 | 19.5 | -32.4 | NP_954905 | 5' arm 3' arm | ||
23584 | + | 27194 | 89 | 20.5 | -31.5 | NP_954909 | 5' arm 3' arm | ||
23559 | + | 6188 | 89 | 22.5 | -31.3 | NP_954895 | 5' arm 3' arm | ||
23756 | - | 49047 | 90 | 24 | -31.2 | NP_954917 | 5' arm 3' arm | ||
23807 | - | 90568 | 88 | 19 | -31 | NP_954940 | 5' arm 3' arm | ||
23605 | + | 51312 | 90 | 24 | -30.9 | NP_954918 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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