miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38639896 NC_005261.1 Bovine herpesvirus 5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23660 + 96639 90 19 -24 NP_954943 5' arm      3' arm
23822 - 100337 89 19 -26.2 NP_954947 5' arm      3' arm
23635 + 74655 90 19 -24.5 NP_954929 5' arm      3' arm
23571 + 16219 89 19 -20.5 NP_954902 5' arm      3' arm
23597 + 45220 90 19 -27.3 NP_954915 5' arm      3' arm
23817 - 96927 90 19 -23.7 NP_954943 5' arm      3' arm
23673 + 104142 88 19 -21 NP_954951 5' arm      3' arm
23824 - 104229 88 19 -24.7 NP_954951 5' arm      3' arm
23843 - 120479 90 19 -22.9 NP_954958 5' arm      3' arm
23796 - 82553 87 19 -30.4 NP_954934 5' arm      3' arm
23681 + 117033 89 19 -21.2 NP_954955 5' arm      3' arm
23653 + 92767 87 19 -27.7 NP_954941 5' arm      3' arm
23804 - 87979 89 19 -29.5 NP_954939 5' arm      3' arm
23633 + 73119 87 19 -25.4 NP_954929 5' arm      3' arm
23649 + 88523 87 19 -21.7 NP_954939 5' arm      3' arm
23807 - 90568 88 19 -31 NP_954940 5' arm      3' arm
23602 + 47437 90 19 -20.4 NP_954917 5' arm      3' arm
23581 + 24544 90 19 -23.1 NP_954908 5' arm      3' arm
23563 + 11492 87 19 -20.6 NP_954900 5' arm      3' arm
23655 + 93775 79 19 -23.4 NP_954942 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.