miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38639896 NC_005261.1 Bovine herpesvirus 5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23700 + 129596 90 27 -25.2 5' arm      3' arm
23829 - 113417 90 27 -25.2 5' arm      3' arm
23704 + 137522 89 26.5 -23.1 5' arm      3' arm
23717 - 13125 90 26 -23.02 NP_954901 5' arm      3' arm
23828 - 113300 86 25.5 -26.3 5' arm      3' arm
23701 + 129713 86 25.5 -26.3 5' arm      3' arm
23812 - 93718 89 24.5 -32.6 NP_954942 5' arm      3' arm
23780 - 70291 90 24 -30.4 NP_954927 5' arm      3' arm
23564 + 11584 84 24 -23.3 NP_954900 5' arm      3' arm
23684 + 118523 90 24 -23.3 NP_954957 5' arm      3' arm
23746 - 29613 90 24 -21.2 NP_954910 5' arm      3' arm
23756 - 49047 90 24 -31.2 NP_954917 5' arm      3' arm
23713 - 9522 90 24 -25.9 NP_954897 5' arm      3' arm
23605 + 51312 90 24 -30.9 NP_954918 5' arm      3' arm
23668 + 102748 90 24 -33.6 5' arm      3' arm
23594 + 42786 90 24 -24.1 NP_954913 5' arm      3' arm
23664 + 100154 89 24 -28.5 NP_954947 5' arm      3' arm
23641 + 82386 90 23.5 -30.5 NP_954934 5' arm      3' arm
23616 + 57804 90 23.5 -26.7 NP_954920 5' arm      3' arm
23638 + 80709 90 23.5 -30.8 NP_954933 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.