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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23700 | + | 129596 | 90 | 27 | -25.2 | 5' arm 3' arm | |||
| 23829 | - | 113417 | 90 | 27 | -25.2 | 5' arm 3' arm | |||
| 23704 | + | 137522 | 89 | 26.5 | -23.1 | 5' arm 3' arm | |||
| 23717 | - | 13125 | 90 | 26 | -23.02 | NP_954901 | 5' arm 3' arm | ||
| 23701 | + | 129713 | 86 | 25.5 | -26.3 | 5' arm 3' arm | |||
| 23828 | - | 113300 | 86 | 25.5 | -26.3 | 5' arm 3' arm | |||
| 23812 | - | 93718 | 89 | 24.5 | -32.6 | NP_954942 | 5' arm 3' arm | ||
| 23756 | - | 49047 | 90 | 24 | -31.2 | NP_954917 | 5' arm 3' arm | ||
| 23746 | - | 29613 | 90 | 24 | -21.2 | NP_954910 | 5' arm 3' arm | ||
| 23664 | + | 100154 | 89 | 24 | -28.5 | NP_954947 | 5' arm 3' arm | ||
| 23780 | - | 70291 | 90 | 24 | -30.4 | NP_954927 | 5' arm 3' arm | ||
| 23594 | + | 42786 | 90 | 24 | -24.1 | NP_954913 | 5' arm 3' arm | ||
| 23684 | + | 118523 | 90 | 24 | -23.3 | NP_954957 | 5' arm 3' arm | ||
| 23713 | - | 9522 | 90 | 24 | -25.9 | NP_954897 | 5' arm 3' arm | ||
| 23668 | + | 102748 | 90 | 24 | -33.6 | 5' arm 3' arm | |||
| 23564 | + | 11584 | 84 | 24 | -23.3 | NP_954900 | 5' arm 3' arm | ||
| 23605 | + | 51312 | 90 | 24 | -30.9 | NP_954918 | 5' arm 3' arm | ||
| 23857 | - | 131804 | 88 | 23.5 | -21.4 | 5' arm 3' arm | |||
| 23638 | + | 80709 | 90 | 23.5 | -30.8 | NP_954933 | 5' arm 3' arm | ||
| 23641 | + | 82386 | 90 | 23.5 | -30.5 | NP_954934 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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