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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23844 | - | 120860 | 80 | 23.5 | -29.4 | NP_954958 | 5' arm 3' arm | ||
| 23841 | - | 120090 | 88 | 20.5 | -20.8 | NP_954958 | 5' arm 3' arm | ||
| 23838 | - | 118719 | 90 | 20.5 | -20.8 | NP_954957 | 5' arm 3' arm | ||
| 23685 | + | 119021 | 90 | 22.5 | -29.1 | NP_954957 | 5' arm 3' arm | ||
| 23684 | + | 118523 | 90 | 24 | -23.3 | NP_954957 | 5' arm 3' arm | ||
| 23839 | - | 119108 | 90 | 19.5 | -24.11 | NP_954957 | 5' arm 3' arm | ||
| 23837 | - | 118318 | 89 | 22.5 | -26.8 | NP_954957 | 5' arm 3' arm | ||
| 23683 | + | 117937 | 90 | 20 | -20.1 | NP_954956 | 5' arm 3' arm | ||
| 23836 | - | 117693 | 87 | 20 | -21.8 | NP_954956 | 5' arm 3' arm | ||
| 23681 | + | 117033 | 89 | 19 | -21.2 | NP_954955 | 5' arm 3' arm | ||
| 23693 | + | 126316 | 90 | 21 | -23 | NP_954955 | 5' arm 3' arm | ||
| 23682 | + | 117175 | 89 | 20 | -20.8 | NP_954955 | 5' arm 3' arm | ||
| 23833 | - | 115526 | 90 | 20.5 | -33.3 | NP_954954 | 5' arm 3' arm | ||
| 23697 | + | 127661 | 90 | 20 | -21.5 | NP_954954 | 5' arm 3' arm | ||
| 23679 | + | 115437 | 90 | 22 | -37.3 | NP_954954 | 5' arm 3' arm | ||
| 23678 | + | 114983 | 86 | 23 | -28 | NP_954954 | 5' arm 3' arm | ||
| 23671 | + | 103509 | 85 | 21 | -23.44 | NP_954952 | 5' arm 3' arm | ||
| 23669 | + | 102875 | 89 | 21.5 | -24.81 | NP_954952 | 5' arm 3' arm | ||
| 23670 | + | 103420 | 88 | 19.5 | -24.8 | NP_954952 | 5' arm 3' arm | ||
| 23672 | + | 104044 | 88 | 21 | -24.1 | NP_954951 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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