miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38639896 NC_005261.1 Bovine herpesvirus 5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23826 - 108679 90 22.5 -21.8 NP_954964 5' arm      3' arm
23703 + 134334 90 22.5 -21.8 NP_954964 5' arm      3' arm
23853 - 128030 86 23 -28 NP_954963 5' arm      3' arm
23852 - 127576 90 22 -37.3 NP_954963 5' arm      3' arm
23832 - 115352 90 20 -21.5 NP_954963 5' arm      3' arm
23696 + 127487 90 20.5 -33.3 NP_954963 5' arm      3' arm
23850 - 125953 84 21.5 -21.9 NP_954962 5' arm      3' arm
23848 - 124952 90 20 -21.5 NP_954961 5' arm      3' arm
23849 - 125603 90 21.5 -26.2 NP_954961 5' arm      3' arm
23692 + 125613 90 19.5 -28.9 NP_954961 5' arm      3' arm
23846 - 123579 89 20 -27 NP_954960 5' arm      3' arm
23847 - 123716 90 23 -22.4 NP_954960 5' arm      3' arm
23690 + 123506 90 19.5 -28.2 NP_954960 5' arm      3' arm
23688 + 121099 88 23 -23.2 NP_954959 5' arm      3' arm
23689 + 121466 90 21.5 -23.1 NP_954959 5' arm      3' arm
23845 - 121554 88 20.5 -26.1 NP_954959 5' arm      3' arm
23841 - 120090 88 20.5 -20.8 NP_954958 5' arm      3' arm
23843 - 120479 90 19 -22.9 NP_954958 5' arm      3' arm
23686 + 119588 90 22.5 -25.5 NP_954958 5' arm      3' arm
23844 - 120860 80 23.5 -29.4 NP_954958 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.