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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23826 | - | 108679 | 90 | 22.5 | -21.8 | NP_954964 | 5' arm 3' arm | ||
| 23703 | + | 134334 | 90 | 22.5 | -21.8 | NP_954964 | 5' arm 3' arm | ||
| 23852 | - | 127576 | 90 | 22 | -37.3 | NP_954963 | 5' arm 3' arm | ||
| 23832 | - | 115352 | 90 | 20 | -21.5 | NP_954963 | 5' arm 3' arm | ||
| 23696 | + | 127487 | 90 | 20.5 | -33.3 | NP_954963 | 5' arm 3' arm | ||
| 23853 | - | 128030 | 86 | 23 | -28 | NP_954963 | 5' arm 3' arm | ||
| 23850 | - | 125953 | 84 | 21.5 | -21.9 | NP_954962 | 5' arm 3' arm | ||
| 23849 | - | 125603 | 90 | 21.5 | -26.2 | NP_954961 | 5' arm 3' arm | ||
| 23692 | + | 125613 | 90 | 19.5 | -28.9 | NP_954961 | 5' arm 3' arm | ||
| 23848 | - | 124952 | 90 | 20 | -21.5 | NP_954961 | 5' arm 3' arm | ||
| 23847 | - | 123716 | 90 | 23 | -22.4 | NP_954960 | 5' arm 3' arm | ||
| 23846 | - | 123579 | 89 | 20 | -27 | NP_954960 | 5' arm 3' arm | ||
| 23690 | + | 123506 | 90 | 19.5 | -28.2 | NP_954960 | 5' arm 3' arm | ||
| 23688 | + | 121099 | 88 | 23 | -23.2 | NP_954959 | 5' arm 3' arm | ||
| 23689 | + | 121466 | 90 | 21.5 | -23.1 | NP_954959 | 5' arm 3' arm | ||
| 23845 | - | 121554 | 88 | 20.5 | -26.1 | NP_954959 | 5' arm 3' arm | ||
| 23843 | - | 120479 | 90 | 19 | -22.9 | NP_954958 | 5' arm 3' arm | ||
| 23841 | - | 120090 | 88 | 20.5 | -20.8 | NP_954958 | 5' arm 3' arm | ||
| 23686 | + | 119588 | 90 | 22.5 | -25.5 | NP_954958 | 5' arm 3' arm | ||
| 23844 | - | 120860 | 80 | 23.5 | -29.4 | NP_954958 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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