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| GenBank Identifier | RefSeq Acc. | Name |
| 62327168 | NC_006938.1 | Bacteriophage phi JL001 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31856 | - | 33252 | 90 | 19 | -23.6 | YP_223983 | 5' arm 3' arm | ||
| 31855 | - | 32837 | 88 | 22 | -19.6 | YP_223983 | 5' arm 3' arm | ||
| 31753 | + | 33001 | 89 | 22.5 | -21 | YP_223983 | 5' arm 3' arm | ||
| 31857 | - | 33644 | 82 | 20.5 | -27.5 | YP_223983 | 5' arm 3' arm | ||
| 31854 | - | 32252 | 89 | 19 | -20.7 | YP_223983 | 5' arm 3' arm | ||
| 31750 | + | 31827 | 87 | 19 | -20 | YP_223982 | 5' arm 3' arm | ||
| 31852 | - | 31657 | 90 | 21 | -21.3 | YP_223982 | 5' arm 3' arm | ||
| 31853 | - | 31815 | 89 | 19 | -27.6 | YP_223982 | 5' arm 3' arm | ||
| 31850 | - | 31025 | 90 | 21 | -26 | YP_223981 | 5' arm 3' arm | ||
| 31748 | + | 30795 | 89 | 19.5 | -25.5 | YP_223981 | 5' arm 3' arm | ||
| 31848 | - | 30767 | 89 | 20.5 | -22.6 | YP_223981 | 5' arm 3' arm | ||
| 31849 | - | 30873 | 88 | 19.5 | -25.4 | YP_223981 | 5' arm 3' arm | ||
| 31847 | - | 30247 | 86 | 19.5 | -20.2 | YP_223979 | 5' arm 3' arm | ||
| 31747 | + | 30132 | 90 | 19.5 | -30.3 | YP_223979 | 5' arm 3' arm | ||
| 31846 | - | 29958 | 89 | 22 | -27.51 | YP_223978 | 5' arm 3' arm | ||
| 31845 | - | 29739 | 89 | 21.5 | -23.5 | YP_223977 | 5' arm 3' arm | ||
| 31843 | - | 29350 | 85 | 19 | -27.7 | YP_223976 | 5' arm 3' arm | ||
| 31844 | - | 29588 | 88 | 22 | -25 | YP_223976 | 5' arm 3' arm | ||
| 31746 | + | 28663 | 88 | 20 | -22.6 | YP_223974 | 5' arm 3' arm | ||
| 31842 | - | 28581 | 90 | 20.5 | -30.1 | YP_223973 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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