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| GenBank Identifier | RefSeq Acc. | Name |
| 29566407 | NC_004686.1 | Mycobacteriophage Che9d virion |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 19698 | - | 40242 | 89 | 21.5 | -25 | NP_818041 | 5' arm 3' arm | ||
| 19694 | - | 38588 | 87 | 26 | -25 | NP_818037 | 5' arm 3' arm | ||
| 19637 | + | 50080 | 90 | 22.5 | -25 | NP_818069 | 5' arm 3' arm | ||
| 19687 | - | 31644 | 89 | 21.5 | -25 | NP_818023 | 5' arm 3' arm | ||
| 19672 | - | 24516 | 90 | 20 | -24.9 | NP_818002 | 5' arm 3' arm | ||
| 19622 | + | 40574 | 90 | 22 | -24.9 | NP_818042 | 5' arm 3' arm | ||
| 19668 | - | 22455 | 90 | 19 | -24.9 | NP_817998 | 5' arm 3' arm | ||
| 19576 | + | 12847 | 86 | 22.5 | -24.8 | NP_817991 | 5' arm 3' arm | ||
| 19665 | - | 16697 | 89 | 20 | -24.8 | NP_817996 | 5' arm 3' arm | ||
| 19619 | + | 39628 | 89 | 21 | -24.8 | NP_818040 | 5' arm 3' arm | ||
| 19612 | + | 35293 | 90 | 21.5 | -24.7 | NP_818027 | 5' arm 3' arm | ||
| 19690 | - | 33028 | 87 | 21.5 | -24.7 | 5' arm 3' arm | |||
| 19667 | - | 20478 | 88 | 20 | -24.7 | NP_817998 | 5' arm 3' arm | ||
| 19615 | + | 38161 | 90 | 21 | -24.7 | NP_818035 | 5' arm 3' arm | ||
| 19692 | - | 35100 | 89 | 21 | -24.7 | NP_818027 | 5' arm 3' arm | ||
| 19655 | - | 11837 | 90 | 20 | -24.5 | NP_817990 | 5' arm 3' arm | ||
| 19608 | + | 32402 | 89 | 21.5 | -24.5 | NP_818023 | 5' arm 3' arm | ||
| 19588 | + | 19780 | 89 | 21 | -24.5 | NP_817998 | 5' arm 3' arm | ||
| 19699 | - | 41731 | 89 | 21 | -24.5 | NP_818046 | 5' arm 3' arm | ||
| 19578 | + | 13675 | 90 | 19 | -24.4 | NP_817991 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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