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GenBank Identifier | RefSeq Acc. | Name |
52353967 | NC_000852.3 | Paramecium bursaria Chlorella virus 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
776 | - | 117643 | 89 | 19.5 | -19.6 | NP_048585 | 5' arm 3' arm | ||
763 | + | 260440 | 88 | 20.5 | -19.8 | NP_048896 | 5' arm 3' arm | ||
786 | - | 310266 | 89 | 21 | -20 | NP_048999 | 5' arm 3' arm | ||
768 | + | 306832 | 90 | 20 | -20.1 | NP_048991 | 5' arm 3' arm | ||
775 | - | 111881 | 90 | 19.5 | -21 | NP_048569 | 5' arm 3' arm | ||
757 | + | 158670 | 90 | 19 | -21.1 | NP_048673 | 5' arm 3' arm | ||
787 | - | 320367 | 89 | 21.5 | -21.4 | NP_049022 | 5' arm 3' arm | ||
780 | - | 197739 | 88 | 25.5 | -21.5 | NP_048762 | 5' arm 3' arm | ||
774 | - | 102985 | 90 | 24 | -21.7 | NP_048546 | 5' arm 3' arm | ||
770 | + | 328100 | 90 | 21.5 | -22 | 5' arm 3' arm | |||
765 | + | 293908 | 90 | 28 | -22 | NP_048971 | 5' arm 3' arm | ||
764 | + | 270653 | 89 | 19 | -22.2 | NP_048919 | 5' arm 3' arm | ||
782 | - | 244968 | 90 | 25 | -22.3 | 5' arm 3' arm | |||
788 | - | 323990 | 90 | 28 | -22.3 | NP_049037 | 5' arm 3' arm | ||
771 | - | 3091 | 83 | 19.5 | -22.3 | NP_048353 | 5' arm 3' arm | ||
753 | + | 81411 | 89 | 19.5 | -22.4 | NP_048507 | 5' arm 3' arm | ||
754 | + | 117556 | 87 | 19.5 | -22.5 | NP_048586 | 5' arm 3' arm | ||
759 | + | 208294 | 90 | 27 | -22.6 | NP_048785 | 5' arm 3' arm | ||
778 | - | 161901 | 90 | 19.5 | -22.8 | NP_048680 | 5' arm 3' arm | ||
756 | + | 157430 | 90 | 19.5 | -22.8 | NP_048670 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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