miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
10834856 NC_002577.1 Gallid herpesvirus 3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9643 + 126865 90 33.5 -32.7 NP_066897 5' arm      3' arm
9699 - 6718 90 33.5 -32.7 NP_066822 5' arm      3' arm
9687 - 2797 90 29.5 -32.9 5' arm      3' arm
9655 + 130786 90 29.5 -32.9 5' arm      3' arm
9694 - 4437 87 29 -30.3 5' arm      3' arm
9648 + 129146 87 29 -30.3 5' arm      3' arm
9698 - 5583 87 28 -33.6 5' arm      3' arm
9644 + 128000 87 28 -33.6 5' arm      3' arm
9688 - 3157 89 27.5 -27.5 NP_066900 5' arm      3' arm
9654 + 130426 89 27.5 -27.5 NP_066819 5' arm      3' arm
9597 + 9769 90 27 -26.4 NP_066825 5' arm      3' arm
9747 - 123814 90 27 -26.4 NP_066894 5' arm      3' arm
9750 - 125174 90 26 -24.1 NP_066896 5' arm      3' arm
9696 - 4728 85 26 -29.3 5' arm      3' arm
9646 + 128855 85 26 -29.3 5' arm      3' arm
9594 + 8409 90 26 -24.1 NP_066896 5' arm      3' arm
9709 - 16263 88 26 -25.4 NP_066829 5' arm      3' arm
9632 + 118396 89 26 -20.2 NP_066890 5' arm      3' arm
9651 + 129671 84 25.5 -27.4 5' arm      3' arm
9737 - 100901 90 25.5 -22.7 NP_066877 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.