miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
12898	-	6820	90	23	-27.7	NP_569745		5' arm      3' arm
12896	-	6314	85	23	-24.91	NP_569745		5' arm      3' arm
12975	-	40554	89	23	-32.4	NP_569799		5' arm      3' arm
12919	-	18800	89	23	-23.1	NP_569759		5' arm      3' arm
13006	-	52591	90	23	-20.3	NP_569825		5' arm      3' arm
12890	-	4846	90	22.5	-21.2	NP_569742		5' arm      3' arm
12871	+	49033	85	22.5	-23	NP_569815		5' arm      3' arm
12853	+	42111	87	22.5	-33.3	NP_569803		5' arm      3' arm
12823	+	26643	89	22.5	-21.5	NP_569768		5' arm      3' arm
12843	+	37221	90	22.5	-20.8			5' arm      3' arm
12813	+	20902	84	22.5	-19.8	NP_569759		5' arm      3' arm
12924	-	21792	90	22.5	-34.6	NP_569761		5' arm      3' arm
12787	+	6627	89	22.5	-23.7	NP_569745		5' arm      3' arm
12783	+	4757	90	22.5	-24.2	NP_569742		5' arm      3' arm
12852	+	41645	89	22	-27.6			5' arm      3' arm
12832	+	29579	88	22	-26	NP_569774		5' arm      3' arm
12929	-	23600	70	22	-31.9	NP_569764		5' arm      3' arm
12782	+	3336	88	22	-23.5	NP_569741		5' arm      3' arm
12996	-	50054	85	22	-26.6			5' arm      3' arm
12842	+	36167	90	22	-19.5			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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