miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18496886 NC_003387.1 Mycobacteriophage TM4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12900 - 7969 88 24 -27.5 NP_569748 5' arm      3' arm
12851 + 41052 90 24 -25.6 NP_569801 5' arm      3' arm
12970 - 39627 90 24 -25.2 NP_569796 5' arm      3' arm
12905 - 12399 90 24 -25.4 NP_569753 5' arm      3' arm
12925 - 22983 89 24 -21.32 NP_569762 5' arm      3' arm
12979 - 41370 80 23.5 -22.3 NP_569802 5' arm      3' arm
12953 - 34456 87 23.5 -21.4 NP_569785 5' arm      3' arm
12921 - 20221 89 23.5 -21.8 NP_569759 5' arm      3' arm
12980 - 43138 88 23.5 -32.7 NP_569803 5' arm      3' arm
12960 - 37026 89 23.5 -26.2 5' arm      3' arm
12884 - 1378 89 23.5 -24 NP_569740 5' arm      3' arm
12798 + 13323 90 23.5 -28.5 NP_569753 5' arm      3' arm
12982 - 44127 90 23.5 -23.4 NP_569803 5' arm      3' arm
12863 + 46145 85 23.5 -27.4 NP_569808 5' arm      3' arm
12999 - 50900 89 23.5 -31.3 NP_569819 5' arm      3' arm
12780 + 2853 90 23 -21.7 NP_569741 5' arm      3' arm
12975 - 40554 89 23 -32.4 NP_569799 5' arm      3' arm
12831 + 29092 88 23 -27.5 NP_569772 5' arm      3' arm
12857 + 43200 87 23 -24.6 NP_569803 5' arm      3' arm
12916 - 17615 90 23 -23.4 NP_569757 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.