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| GenBank Identifier | RefSeq Acc. | Name |
| 18496886 | NC_003387.1 | Mycobacteriophage TM4 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 12976 | - | 40850 | 89 | 25.5 | -30.6 | NP_569800 | 5' arm 3' arm | ||
| 12913 | - | 15287 | 87 | 20.5 | -30.5 | NP_569755 | 5' arm 3' arm | ||
| 12845 | + | 37784 | 87 | 21.5 | -30.5 | NP_569792 | 5' arm 3' arm | ||
| 12904 | - | 10307 | 90 | 20.5 | -30.2 | NP_569753 | 5' arm 3' arm | ||
| 12998 | - | 50686 | 90 | 19.5 | -29.9 | 5' arm 3' arm | |||
| 12892 | - | 5838 | 90 | 24.5 | -29.8 | NP_569744 | 5' arm 3' arm | ||
| 12790 | + | 10227 | 87 | 19 | -29.6 | NP_569753 | 5' arm 3' arm | ||
| 12862 | + | 44850 | 89 | 21 | -29.4 | NP_569805 | 5' arm 3' arm | ||
| 12932 | - | 26327 | 87 | 19.5 | -29.3 | NP_569766 | 5' arm 3' arm | ||
| 12795 | + | 11217 | 87 | 21 | -29.2 | NP_569753 | 5' arm 3' arm | ||
| 12972 | - | 40004 | 89 | 20.5 | -29.2 | NP_569798 | 5' arm 3' arm | ||
| 12878 | + | 51425 | 90 | 20 | -29.2 | NP_569821 | 5' arm 3' arm | ||
| 12973 | - | 40091 | 87 | 20 | -28.6 | NP_569798 | 5' arm 3' arm | ||
| 12876 | + | 51026 | 90 | 20 | -28.6 | 5' arm 3' arm | |||
| 12798 | + | 13323 | 90 | 23.5 | -28.5 | NP_569753 | 5' arm 3' arm | ||
| 12952 | - | 34024 | 89 | 20.5 | -28.4 | NP_569784 | 5' arm 3' arm | ||
| 12978 | - | 41139 | 85 | 25 | -28 | NP_569801 | 5' arm 3' arm | ||
| 12910 | - | 13856 | 88 | 20 | -28 | NP_569753 | 5' arm 3' arm | ||
| 12898 | - | 6820 | 90 | 23 | -27.7 | NP_569745 | 5' arm 3' arm | ||
| 12974 | - | 40323 | 89 | 24 | -27.6 | NP_569799 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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