miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18496886 NC_003387.1 Mycobacteriophage TM4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12777 + 1846 88 19 -26.6 NP_569740 5' arm      3' arm
12859 + 43624 86 19.5 -26.3 NP_569803 5' arm      3' arm
12817 + 22627 88 19.5 -23.1 5' arm      3' arm
12844 + 37432 88 19.5 -19.7 5' arm      3' arm
12799 + 15276 86 19.5 -22.5 NP_569755 5' arm      3' arm
12800 + 15408 89 19.5 -22.2 NP_569755 5' arm      3' arm
12824 + 26794 87 19.5 -22.4 NP_569768 5' arm      3' arm
12809 + 19063 90 19.5 -22.4 NP_569759 5' arm      3' arm
12951 - 33710 90 19.5 -20.6 NP_569783 5' arm      3' arm
12990 - 47643 87 19.5 -21.5 NP_569812 5' arm      3' arm
12850 + 40882 90 19.5 -20.6 NP_569800 5' arm      3' arm
12961 - 37358 90 19.5 -24.1 5' arm      3' arm
12781 + 3197 84 19.5 -21.5 NP_569741 5' arm      3' arm
12778 + 2474 88 19.5 -26.2 NP_569741 5' arm      3' arm
12998 - 50686 90 19.5 -29.9 5' arm      3' arm
12946 - 30930 89 19.5 -24.4 5' arm      3' arm
12792 + 10895 90 19.5 -23.7 NP_569753 5' arm      3' arm
12797 + 12573 86 19.5 -20.9 NP_569753 5' arm      3' arm
12932 - 26327 87 19.5 -29.3 NP_569766 5' arm      3' arm
12854 + 42357 87 19.5 -21 NP_569803 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.