miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18496886 NC_003387.1 Mycobacteriophage TM4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12791 + 10521 86 20.5 -21 NP_569753 5' arm      3' arm
12792 + 10895 90 19.5 -23.7 NP_569753 5' arm      3' arm
12793 + 10997 89 20 -21 NP_569753 5' arm      3' arm
12794 + 11111 88 20.5 -23.8 NP_569753 5' arm      3' arm
12795 + 11217 87 21 -29.2 NP_569753 5' arm      3' arm
12796 + 11596 81 20.5 -26.4 NP_569753 5' arm      3' arm
12797 + 12573 86 19.5 -20.9 NP_569753 5' arm      3' arm
12798 + 13323 90 23.5 -28.5 NP_569753 5' arm      3' arm
12799 + 15276 86 19.5 -22.5 NP_569755 5' arm      3' arm
12800 + 15408 89 19.5 -22.2 NP_569755 5' arm      3' arm
12801 + 15778 89 19 -24.9 NP_569755 5' arm      3' arm
12802 + 15957 89 21.5 -24 NP_569755 5' arm      3' arm
12803 + 16927 90 21 -19.7 NP_569756 5' arm      3' arm
12804 + 17057 90 21.5 -25.63 NP_569756 5' arm      3' arm
12805 + 17661 78 20 -26.5 NP_569757 5' arm      3' arm
12806 + 18089 89 20.5 -24.4 NP_569757 5' arm      3' arm
12807 + 18753 89 19 -22.8 NP_569759 5' arm      3' arm
12808 + 18955 90 20 -26.4 NP_569759 5' arm      3' arm
12809 + 19063 90 19.5 -22.4 NP_569759 5' arm      3' arm
12810 + 19159 90 22 -22.6 NP_569759 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.