miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18496886 NC_003387.1 Mycobacteriophage TM4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12917 - 18012 84 21 -36.8 5' arm      3' arm
12773 + 696 89 24.5 -36.6 NP_569740 5' arm      3' arm
12873 + 50555 89 21.5 -36.2 5' arm      3' arm
12786 + 5952 90 20 -35.4 5' arm      3' arm
12945 - 30763 87 22 -35.1 5' arm      3' arm
12924 - 21792 90 22.5 -34.6 NP_569761 5' arm      3' arm
12834 + 30371 90 20.5 -34.2 NP_569775 5' arm      3' arm
12830 + 28297 90 24.5 -34.1 NP_569771 5' arm      3' arm
12870 + 48902 89 25 -33.4 NP_569815 5' arm      3' arm
12853 + 42111 87 22.5 -33.3 NP_569803 5' arm      3' arm
12771 + 419 88 22 -33.1 NP_569739 5' arm      3' arm
12894 - 6035 80 22 -32.9 5' arm      3' arm
12980 - 43138 88 23.5 -32.7 NP_569803 5' arm      3' arm
12975 - 40554 89 23 -32.4 NP_569799 5' arm      3' arm
12933 - 26646 90 21 -32.3 NP_569767 5' arm      3' arm
12833 + 29853 89 23 -32.2 5' arm      3' arm
12846 + 38303 90 25.5 -32.1 NP_569792 5' arm      3' arm
12929 - 23600 70 22 -31.9 NP_569764 5' arm      3' arm
12957 - 35889 90 21 -31.8 NP_569788 5' arm      3' arm
12999 - 50900 89 23.5 -31.3 NP_569819 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.