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GenBank Identifier | RefSeq Acc. | Name |
18496886 | NC_003387.1 | Mycobacteriophage TM4 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
12917 | - | 18012 | 84 | 21 | -36.8 | 5' arm 3' arm | |||
12773 | + | 696 | 89 | 24.5 | -36.6 | NP_569740 | 5' arm 3' arm | ||
12873 | + | 50555 | 89 | 21.5 | -36.2 | 5' arm 3' arm | |||
12786 | + | 5952 | 90 | 20 | -35.4 | 5' arm 3' arm | |||
12945 | - | 30763 | 87 | 22 | -35.1 | 5' arm 3' arm | |||
12924 | - | 21792 | 90 | 22.5 | -34.6 | NP_569761 | 5' arm 3' arm | ||
12834 | + | 30371 | 90 | 20.5 | -34.2 | NP_569775 | 5' arm 3' arm | ||
12830 | + | 28297 | 90 | 24.5 | -34.1 | NP_569771 | 5' arm 3' arm | ||
12870 | + | 48902 | 89 | 25 | -33.4 | NP_569815 | 5' arm 3' arm | ||
12853 | + | 42111 | 87 | 22.5 | -33.3 | NP_569803 | 5' arm 3' arm | ||
12771 | + | 419 | 88 | 22 | -33.1 | NP_569739 | 5' arm 3' arm | ||
12894 | - | 6035 | 80 | 22 | -32.9 | 5' arm 3' arm | |||
12980 | - | 43138 | 88 | 23.5 | -32.7 | NP_569803 | 5' arm 3' arm | ||
12975 | - | 40554 | 89 | 23 | -32.4 | NP_569799 | 5' arm 3' arm | ||
12933 | - | 26646 | 90 | 21 | -32.3 | NP_569767 | 5' arm 3' arm | ||
12833 | + | 29853 | 89 | 23 | -32.2 | 5' arm 3' arm | |||
12846 | + | 38303 | 90 | 25.5 | -32.1 | NP_569792 | 5' arm 3' arm | ||
12929 | - | 23600 | 70 | 22 | -31.9 | NP_569764 | 5' arm 3' arm | ||
12957 | - | 35889 | 90 | 21 | -31.8 | NP_569788 | 5' arm 3' arm | ||
12999 | - | 50900 | 89 | 23.5 | -31.3 | NP_569819 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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