miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18496886 NC_003387.1 Mycobacteriophage TM4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12846 + 38303 90 25.5 -32.1 NP_569792 5' arm      3' arm
12976 - 40850 89 25.5 -30.6 NP_569800 5' arm      3' arm
12992 - 47906 90 25.5 -25.8 NP_569813 5' arm      3' arm
12870 + 48902 89 25 -33.4 NP_569815 5' arm      3' arm
12978 - 41139 85 25 -28 NP_569801 5' arm      3' arm
12901 - 8535 90 25 -23.3 5' arm      3' arm
12949 - 32754 86 25 -25.8 NP_569781 5' arm      3' arm
12918 - 18174 83 25 -23.3 NP_569757 5' arm      3' arm
12889 - 4747 89 25 -25.2 NP_569742 5' arm      3' arm
12940 - 28331 90 24.5 -26.8 NP_569771 5' arm      3' arm
12825 + 26886 90 24.5 -23.5 NP_569768 5' arm      3' arm
12911 - 14937 89 24.5 -21.7 NP_569754 5' arm      3' arm
12773 + 696 89 24.5 -36.6 NP_569740 5' arm      3' arm
13004 - 52307 88 24.5 -26.5 NP_569824 5' arm      3' arm
13001 - 51173 90 24.5 -19.8 5' arm      3' arm
12830 + 28297 90 24.5 -34.1 NP_569771 5' arm      3' arm
12892 - 5838 90 24.5 -29.8 NP_569744 5' arm      3' arm
12822 + 26280 90 24 -25.9 NP_569766 5' arm      3' arm
12925 - 22983 89 24 -21.32 NP_569762 5' arm      3' arm
12974 - 40323 89 24 -27.6 NP_569799 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.