miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
10140926 NC_002531.1 Alcelaphine herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9472 - 26538 90 27 -21.6 5' arm      3' arm
9503 - 90253 90 20 -21.5 NP_065560 5' arm      3' arm
9496 - 69130 89 25.5 -27.7 NP_065542 5' arm      3' arm
9492 - 60449 89 22 -30 NP_065535 5' arm      3' arm
9488 - 55228 88 24.5 -30.8 NP_065531 5' arm      3' arm
9470 - 17533 89 21.5 -27.8 NP_065511 5' arm      3' arm
9484 - 30365 89 22.5 -25 5' arm      3' arm
9482 - 30106 89 24.5 -26.4 5' arm      3' arm
9478 - 28912 89 29 -20.9 5' arm      3' arm
9485 - 32409 90 25 -31.1 5' arm      3' arm
9466 - 7279 90 23 -20.6 NP_065508 5' arm      3' arm
9439 + 61846 89 20 -21.8 NP_065537 5' arm      3' arm
9440 + 62902 90 20 -22.5 NP_065538 5' arm      3' arm
9441 + 67403 87 21 -24.9 NP_065542 5' arm      3' arm
9438 + 60069 85 21.5 -24.46 NP_065535 5' arm      3' arm
9420 + 29169 84 24.5 -31 5' arm      3' arm
9443 + 88742 90 20 -22.9 NP_065559 5' arm      3' arm
9426 + 35042 85 21.5 -21.9 NP_065516 5' arm      3' arm
9428 + 35832 90 21.5 -22.9 NP_065517 5' arm      3' arm
9427 + 35483 88 20.5 -19.6 NP_065517 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.