miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
10140926 NC_002531.1 Alcelaphine herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9493 - 61180 89 20.5 -24.4 NP_065536 5' arm      3' arm
9495 - 64420 89 20 -23.8 NP_065539 5' arm      3' arm
9506 - 92405 86 21 -22.6 NP_065561 5' arm      3' arm
9511 - 113524 89 23.5 -20.8 5' arm      3' arm
9480 - 29378 89 26.5 -22.9 5' arm      3' arm
9487 - 50701 80 24 -26.8 NP_065525 5' arm      3' arm
9496 - 69130 89 25.5 -27.7 NP_065542 5' arm      3' arm
9512 - 121102 90 21 -31.4 5' arm      3' arm
9489 - 57225 90 19.5 -23.3 NP_065532 5' arm      3' arm
9513 - 122605 87 19 -26.9 NP_065571 5' arm      3' arm
9497 - 70590 88 19 -22.4 NP_065544 5' arm      3' arm
9491 - 58426 89 20.5 -32.6 NP_065533 5' arm      3' arm
9499 - 78213 87 20 -20.9 NP_065550 5' arm      3' arm
9503 - 90253 90 20 -21.5 NP_065560 5' arm      3' arm
9507 - 102464 87 23.5 -24.6 NP_065563 5' arm      3' arm
9510 - 112351 81 23 -21.4 5' arm      3' arm
9479 - 29253 86 23.5 -26.2 5' arm      3' arm
9475 - 28022 89 26.5 -22.2 5' arm      3' arm
9477 - 28281 90 30 -26.2 5' arm      3' arm
9486 - 47105 90 24 -26.6 NP_065524 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.