miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
10140926 NC_002531.1 Alcelaphine herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9435 + 54776 90 24 -27.1 NP_065530 5' arm      3' arm
9445 + 94723 88 20 -26.9 NP_065562 5' arm      3' arm
9513 - 122605 87 19 -26.9 NP_065571 5' arm      3' arm
9487 - 50701 80 24 -26.8 NP_065525 5' arm      3' arm
9473 - 27270 90 22 -26.74 5' arm      3' arm
9504 - 90413 88 22.5 -26.7 NP_065560 5' arm      3' arm
9454 + 121602 89 22.5 -26.6 NP_065571 5' arm      3' arm
9486 - 47105 90 24 -26.6 NP_065524 5' arm      3' arm
9505 - 90728 88 23.5 -26.6 NP_065560 5' arm      3' arm
9437 + 57995 89 19 -26.6 NP_065533 5' arm      3' arm
9483 - 30270 85 20.5 -26.6 5' arm      3' arm
9471 - 26432 89 25.5 -26.4 5' arm      3' arm
9455 + 121838 79 19 -26.4 NP_065571 5' arm      3' arm
9482 - 30106 89 24.5 -26.4 5' arm      3' arm
9477 - 28281 90 30 -26.2 5' arm      3' arm
9479 - 29253 86 23.5 -26.2 5' arm      3' arm
9457 + 122364 90 19 -26.2 NP_065571 5' arm      3' arm
9442 + 69336 90 22 -25.5 NP_065543 5' arm      3' arm
9484 - 30365 89 22.5 -25 5' arm      3' arm
9441 + 67403 87 21 -24.9 NP_065542 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.