miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
10140926 NC_002531.1 Alcelaphine herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9443 + 88742 90 20 -22.9 NP_065559 5' arm      3' arm
9449 + 109913 90 20 -22.9 5' arm      3' arm
9440 + 62902 90 20 -22.5 NP_065538 5' arm      3' arm
9503 - 90253 90 20 -21.5 NP_065560 5' arm      3' arm
9456 + 122057 90 20 -20.1 NP_065571 5' arm      3' arm
9452 + 119663 85 20 -30.42 NP_065570 5' arm      3' arm
9418 + 20110 87 20 -24.3 NP_065512 5' arm      3' arm
9416 + 11392 87 20 -31.3 NP_065509 5' arm      3' arm
9415 + 6996 89 20 -23.5 NP_065508 5' arm      3' arm
9495 - 64420 89 20 -23.8 NP_065539 5' arm      3' arm
9499 - 78213 87 20 -20.9 NP_065550 5' arm      3' arm
9450 + 115819 87 20.5 -19.63 5' arm      3' arm
9509 - 108559 89 20.5 -20.9 NP_065569 5' arm      3' arm
9422 + 30018 89 20.5 -24.1 5' arm      3' arm
9427 + 35483 88 20.5 -19.6 NP_065517 5' arm      3' arm
9491 - 58426 89 20.5 -32.6 NP_065533 5' arm      3' arm
9430 + 37960 77 20.5 -24.5 NP_065519 5' arm      3' arm
9431 + 39060 87 20.5 -23.6 NP_065520 5' arm      3' arm
9432 + 39840 85 20.5 -19.42 NP_065520 5' arm      3' arm
9493 - 61180 89 20.5 -24.4 NP_065536 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.