miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
10140926 NC_002531.1 Alcelaphine herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9487 - 50701 80 24 -26.8 NP_065525 5' arm      3' arm
9468 - 13234 85 24 -24 NP_065509 5' arm      3' arm
9511 - 113524 89 23.5 -20.8 5' arm      3' arm
9423 + 32321 86 23.5 -35 5' arm      3' arm
9464 - 159 90 23.5 -29.3 5' arm      3' arm
9505 - 90728 88 23.5 -26.6 NP_065560 5' arm      3' arm
9494 - 62096 89 23.5 -19.7 NP_065537 5' arm      3' arm
9433 + 42893 87 23.5 -20.5 NP_065522 5' arm      3' arm
9507 - 102464 87 23.5 -24.6 NP_065563 5' arm      3' arm
9479 - 29253 86 23.5 -26.2 5' arm      3' arm
9466 - 7279 90 23 -20.6 NP_065508 5' arm      3' arm
9510 - 112351 81 23 -21.4 5' arm      3' arm
9462 + 129545 90 22.5 -20.7 NP_065573 5' arm      3' arm
9447 + 103499 84 22.5 -21 NP_065564 5' arm      3' arm
9501 - 82749 89 22.5 -22.6 NP_065555 5' arm      3' arm
9484 - 30365 89 22.5 -25 5' arm      3' arm
9504 - 90413 88 22.5 -26.7 NP_065560 5' arm      3' arm
9454 + 121602 89 22.5 -26.6 NP_065571 5' arm      3' arm
9425 + 34932 89 22.5 -20.2 NP_065516 5' arm      3' arm
9442 + 69336 90 22 -25.5 NP_065543 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.