miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
10140926 NC_002531.1 Alcelaphine herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9460 + 124357 89 21.5 -21.2 NP_065571 5' arm      3' arm
9510 - 112351 81 23 -21.4 5' arm      3' arm
9503 - 90253 90 20 -21.5 NP_065560 5' arm      3' arm
9472 - 26538 90 27 -21.6 5' arm      3' arm
9434 + 49360 87 19 -21.7 NP_065524 5' arm      3' arm
9439 + 61846 89 20 -21.8 NP_065537 5' arm      3' arm
9426 + 35042 85 21.5 -21.9 NP_065516 5' arm      3' arm
9463 + 130003 82 19 -22.1 NP_065573 5' arm      3' arm
9475 - 28022 89 26.5 -22.2 5' arm      3' arm
9465 - 518 89 26.5 -22.31 5' arm      3' arm
9497 - 70590 88 19 -22.4 NP_065544 5' arm      3' arm
9440 + 62902 90 20 -22.5 NP_065538 5' arm      3' arm
9501 - 82749 89 22.5 -22.6 NP_065555 5' arm      3' arm
9506 - 92405 86 21 -22.6 NP_065561 5' arm      3' arm
9500 - 78327 87 19 -22.8 NP_065550 5' arm      3' arm
9474 - 27372 90 24.5 -22.8 5' arm      3' arm
9449 + 109913 90 20 -22.9 5' arm      3' arm
9443 + 88742 90 20 -22.9 NP_065559 5' arm      3' arm
9428 + 35832 90 21.5 -22.9 NP_065517 5' arm      3' arm
9502 - 84744 90 21.5 -22.9 NP_065556 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.