miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
9432	+	39840	85	20.5	-19.42	NP_065520		5' arm      3' arm
9427	+	35483	88	20.5	-19.6	NP_065517		5' arm      3' arm
9450	+	115819	87	20.5	-19.63			5' arm      3' arm
9494	-	62096	89	23.5	-19.7	NP_065537		5' arm      3' arm
9456	+	122057	90	20	-20.1	NP_065571		5' arm      3' arm
9425	+	34932	89	22.5	-20.2	NP_065516		5' arm      3' arm
9451	+	116700	90	22	-20.2	NP_065570		5' arm      3' arm
9448	+	104456	90	19.5	-20.2	NP_065565		5' arm      3' arm
9419	+	29024	88	22	-20.32			5' arm      3' arm
9469	-	13957	87	20.5	-20.4	NP_065509		5' arm      3' arm
9433	+	42893	87	23.5	-20.5	NP_065522		5' arm      3' arm
9466	-	7279	90	23	-20.6	NP_065508		5' arm      3' arm
9462	+	129545	90	22.5	-20.7	NP_065573		5' arm      3' arm
9511	-	113524	89	23.5	-20.8			5' arm      3' arm
9509	-	108559	89	20.5	-20.9	NP_065569		5' arm      3' arm
9499	-	78213	87	20	-20.9	NP_065550		5' arm      3' arm
9478	-	28912	89	29	-20.9			5' arm      3' arm
9447	+	103499	84	22.5	-21	NP_065564		5' arm      3' arm
9498	-	77971	82	19	-21.1	NP_065550		5' arm      3' arm
9417	+	18538	86	19.5	-21.1	NP_065511		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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